Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1779

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10146 and 10147 are separated by 571 nucleotides10147 and 10148 are separated by 675 nucleotides mRNA_1778: 10146 - HMMPfam-Protein of unknown function (DUF3140)-PF11338, at 183,899 to 184,487 10146 mRNA_1779: 10147 - KOG1336 Monodehydroascorbate/ferredoxin reductase, at 185,059 to 187,419 10147 mRNA_1780: 10148 - K03097 CSNK2A casein kinase II subunit alpha, at 188,095 to 190,025 10148

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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184,417 - 10146 mRNA_1778 0.88 -0.2
184,427 - 10146 mRNA_1778 0.90 +0.7
184,433 + -1.0
184,565 + +0.2
184,845 - -1.0
184,853 + +0.9
184,856 - -0.3
184,881 + +0.4
184,882 - -0.4
184,883 + +1.4
184,891 + -0.6
184,894 - -1.4
184,898 - -0.4
184,899 - +0.3
184,933 - -0.0
184,954 + -1.0
185,068 - -1.1
185,079 - +0.9
185,245 + -0.2
185,257 + -0.2
185,259 - -1.2
185,402 + 10147 mRNA_1779 0.15 +0.4
185,452 - 10147 mRNA_1779 0.17 +0.4
185,466 + 10147 mRNA_1779 0.17 +0.2
185,492 - 10147 mRNA_1779 0.18 +0.5
185,496 - 10147 mRNA_1779 0.19 +0.4
185,563 - 10147 mRNA_1779 0.21 +1.5
185,795 - 10147 mRNA_1779 0.31 +0.3
185,964 - 10147 mRNA_1779 0.38 -0.2
186,055 - 10147 mRNA_1779 0.42 -0.1
186,229 - 10147 mRNA_1779 0.50 -0.7
186,345 + 10147 mRNA_1779 0.54 -0.5
186,625 - 10147 mRNA_1779 0.66 +0.7
186,726 + 10147 mRNA_1779 0.71 -1.2
186,749 + 10147 mRNA_1779 0.72 +0.9
186,783 + 10147 mRNA_1779 0.73 +0.4
186,795 + 10147 mRNA_1779 0.74 -0.1
187,213 + -1.9
187,404 + -0.5
187,485 + +0.3
187,515 - -0.5
187,627 - -0.1
187,631 - -0.2
187,653 + -0.3
187,671 + +0.8
187,677 - -1.1
187,681 - +0.4
187,684 - +0.7
187,731 - +0.3
187,733 - +0.3
187,736 - +0.1
187,739 + +0.7
187,748 - +0.9
187,750 + +0.2
187,750 - +1.7
187,758 - -0.3
187,762 - -1.2
187,763 + +0.8
187,789 - -0.2
187,798 + -1.2
187,814 + +0.4
187,820 + -0.6
187,956 + +0.1
187,970 + -2.0

Or see this region's nucleotide sequence