Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1784

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10152 and 10153 are separated by 747 nucleotides mRNA_1784: 10152 - KOG0257 Kynurenine aminotransferase, glutamine transaminase K, at 201,521 to 204,096 10152 mRNA_1785: 10153 - K04077 groEL, HSPD1 chaperonin GroEL, at 204,844 to 206,779 10153

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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200,556 - -0.0
200,814 - +0.6
200,845 - -0.3
201,002 - +0.3
201,003 + +0.3
201,145 - +0.5
201,150 + -1.0
201,152 + +0.5
201,312 + -0.2
201,332 - +0.6
201,336 - +0.3
201,411 - +1.2
201,412 + -0.0
201,412 + -0.3
201,453 - +0.6
201,459 - +0.1
201,461 + -0.7
201,596 - -0.4
201,650 + +0.1
201,753 - -0.1
201,763 - -0.4
201,766 + -0.3
202,370 - 10152 mRNA_1784 0.33 +0.6
202,579 - 10152 mRNA_1784 0.41 +0.2
202,655 + 10152 mRNA_1784 0.44 -2.7
203,005 + 10152 mRNA_1784 0.58 -0.0
203,014 + 10152 mRNA_1784 0.58 +0.4
203,208 - 10152 mRNA_1784 0.65 -0.3
203,373 + 10152 mRNA_1784 0.72 +0.7
203,509 - 10152 mRNA_1784 0.77 -0.4
203,634 - 10152 mRNA_1784 0.82 +1.8
203,645 + 10152 mRNA_1784 0.82 +0.7
204,095 + +0.0
204,308 + +0.3
204,365 + -0.9
204,369 - -0.2
204,403 - +0.1

Or see this region's nucleotide sequence