Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1811

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10178 and 10179 are separated by 359 nucleotides10179 and 10180 are separated by 262 nucleotides mRNA_1810: 10178 - HMMPfam-Predicted SAM-dependent RNA methyltransferase-PF04252, at 260,255 to 261,213 10178 mRNA_1811: 10179 - HMMPfam-Centrosome microtubule-binding domain of Cep57-PF06657, at 261,573 to 264,889 10179 mRNA_1812: 10180 - Hypothetical Protein, at 265,152 to 268,202 10180

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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260,981 + 10178 mRNA_1810 0.76 -0.4
260,996 - 10178 mRNA_1810 0.77 +0.1
260,999 + 10178 mRNA_1810 0.78 -0.1
261,007 + 10178 mRNA_1810 0.78 +0.8
261,013 - 10178 mRNA_1810 0.79 -0.2
261,015 - 10178 mRNA_1810 0.79 -1.7
261,156 - +0.2
261,169 - +0.3
261,174 - -0.7
261,185 - -0.2
261,299 - +0.0
261,302 + +1.4
261,314 + +0.8
261,348 - +0.4
261,356 + +0.1
261,363 - -0.3
261,364 - -0.1
261,481 - -0.1
261,648 - +0.3
261,654 - -0.1
263,096 - 10179 mRNA_1811 0.46 -0.5
264,832 - -0.1
264,878 + -0.9
265,020 - -0.1
265,146 + -0.2
265,865 - 10180 mRNA_1812 0.23 +0.1
265,872 + 10180 mRNA_1812 0.24 -0.4

Or see this region's nucleotide sequence