Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1815

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10183 and 10184 are separated by 739 nucleotides mRNA_1815: 10183 - K20777 EXD2 exonuclease 3'-5' domain-containing protein 2, at 280,165 to 281,761 10183 mRNA_1816: 10184 - K08178 JEN MFS transporter, SHS family, lactate transporter, at 282,501 to 284,889 10184

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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279,168 + +0.2
279,183 - -0.8
279,395 - +0.9
279,854 - +1.1
280,022 - +1.8
280,172 - +0.3
280,282 - -0.3
280,461 + 10183 mRNA_1815 0.19 +0.3
280,504 + 10183 mRNA_1815 0.21 -0.6
281,379 + 10183 mRNA_1815 0.76 -0.9
281,495 - 10183 mRNA_1815 0.83 +1.1
281,657 - +0.1
281,659 - -1.0
281,661 - -0.6
281,682 + +0.9
281,748 + +0.1
281,762 - +0.3
281,784 - +1.6
281,785 + -0.2
281,803 - +0.1
281,808 - +0.2
281,810 + -1.0
281,826 - +0.8
281,827 + +0.2
281,859 - -1.0
281,896 + -0.2
281,935 + -0.6
281,950 + -0.1
281,978 - +0.1
281,981 + +0.3
282,003 - +0.4
282,004 + +0.4
282,008 - -0.9
282,015 + +1.6
282,019 - -1.1
282,025 + +0.4
282,040 + +0.4
282,076 + -1.3
282,184 + -0.7
282,195 - -0.2
282,209 + -0.1
282,212 + -1.3
282,215 - -0.2
282,240 + -0.0
282,242 - +0.5
282,280 + -0.2
282,282 + -0.9
282,287 + -0.6
282,306 - +1.2
282,310 + +2.0
282,352 - -0.1
282,352 + +0.2
282,355 - +0.0
282,360 + +0.2
282,361 + -0.6
282,361 - -0.5
282,362 - +0.4
282,364 - +0.3
282,364 + +1.7
282,364 - +1.0
282,375 - -0.6
282,381 + +1.1
282,382 + -1.2
282,387 - -0.2
282,395 + +0.1
282,397 + +0.8
282,401 - +0.9
282,418 - +0.4
282,439 - +0.7
282,522 + +0.5
282,532 + +0.3
282,569 + -0.3
282,579 + +0.3
282,678 - +0.1

Or see this region's nucleotide sequence