Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1821

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10188 and 10189 are separated by 32 nucleotides10189 and 10190 are separated by 697 nucleotides mRNA_1820: 10188 - Hypothetical Protein, at 290,979 to 291,681 10188 mRNA_1821: 10189 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 291,714 to 294,112 10189 mRNA_1822: 10190 - KOG0627 Heat shock transcription factor, at 294,810 to 296,545 10190

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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290,806 + +1.9
290,952 - +0.1
291,258 - 10188 mRNA_1820 0.40 +0.5
291,269 - 10188 mRNA_1820 0.41 +1.8
291,271 - 10188 mRNA_1820 0.42 +0.5
291,275 - 10188 mRNA_1820 0.42 -0.2
291,276 - 10188 mRNA_1820 0.42 +0.2
291,278 + 10188 mRNA_1820 0.43 +0.6
291,281 - 10188 mRNA_1820 0.43 +2.0
291,283 + 10188 mRNA_1820 0.43 +0.0
291,283 - 10188 mRNA_1820 0.43 -0.5
291,289 + 10188 mRNA_1820 0.44 +0.2
291,289 + 10188 mRNA_1820 0.44 -1.0
291,290 - 10188 mRNA_1820 0.44 -1.8
291,297 + 10188 mRNA_1820 0.45 -1.5
291,299 + 10188 mRNA_1820 0.46 -0.2
291,300 - 10188 mRNA_1820 0.46 +0.4
291,317 - 10188 mRNA_1820 0.48 +0.9
291,349 + 10188 mRNA_1820 0.53 +0.4
291,352 - 10188 mRNA_1820 0.53 +0.4
291,358 - 10188 mRNA_1820 0.54 +0.0
291,370 + 10188 mRNA_1820 0.56 +1.0
291,371 + 10188 mRNA_1820 0.56 +1.2
291,416 - 10188 mRNA_1820 0.62 -0.3
291,416 + 10188 mRNA_1820 0.62 +0.8
291,437 + 10188 mRNA_1820 0.65 +1.1
291,438 + 10188 mRNA_1820 0.65 -0.1
291,520 + 10188 mRNA_1820 0.77 +0.4
291,552 - 10188 mRNA_1820 0.82 -0.1
291,557 - 10188 mRNA_1820 0.82 -0.8
291,581 + 10188 mRNA_1820 0.86 -0.1
291,582 - 10188 mRNA_1820 0.86 +0.2
291,587 + 10188 mRNA_1820 0.86 -0.3
291,596 + 10188 mRNA_1820 0.88 +1.2
291,601 + 10188 mRNA_1820 0.88 +0.6
291,620 - -0.2
291,762 - -0.1
291,781 - -0.1
291,799 - +0.6
291,933 - +0.2
291,962 - 10189 mRNA_1821 0.10 -0.5
292,036 - 10189 mRNA_1821 0.13 +0.0
292,042 - 10189 mRNA_1821 0.14 -0.1
292,049 + 10189 mRNA_1821 0.14 +0.4
292,064 - 10189 mRNA_1821 0.15 -0.4
292,222 - 10189 mRNA_1821 0.21 +1.5
292,240 + 10189 mRNA_1821 0.22 +1.4
292,380 - 10189 mRNA_1821 0.28 -0.3
292,403 - 10189 mRNA_1821 0.29 +0.4
292,501 - 10189 mRNA_1821 0.33 +1.2
293,253 - 10189 mRNA_1821 0.64 +0.3
293,542 + 10189 mRNA_1821 0.76 +0.2
293,793 + 10189 mRNA_1821 0.87 -1.9
293,854 - 10189 mRNA_1821 0.89 -0.2
293,983 - -0.1
294,137 - +0.0
294,190 - -0.9
294,407 - +0.1
294,410 + -1.1
294,451 + -1.0
294,562 - -0.5
295,045 - 10190 mRNA_1822 0.14 +0.4

Or see this region's nucleotide sequence