Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1923

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10289 and 10290 are separated by 36 nucleotides10290 and 10291 are separated by 219 nucleotides10291 and 10292 are separated by 222 nucleotides mRNA_1921: 10289 - KOG4373 Predicted 3'-5' exonuclease, at 517,842 to 518,810 10289 mRNA_1922: 10290 - Hypothetical Protein, at 518,847 to 519,239 10290 mRNA_1923: 10291 - K19787 CARNMT1 carnosine N-methyltransferase, at 519,459 to 521,071 10291 mRNA_1924: 10292 - K00763 pncB, NAPRT1 nicotinate phosphoribosyltransferase, at 521,294 to 523,495 10292

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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518,611 - 10289 mRNA_1921 0.79 +3.0
518,615 - 10289 mRNA_1921 0.80 +0.4
518,936 - 10290 mRNA_1922 0.23 -1.3
519,163 - 10290 mRNA_1922 0.80 -0.1
519,377 - -0.2
519,674 + 10291 mRNA_1923 0.13 +0.2
520,262 - 10291 mRNA_1923 0.50 -1.1
520,289 + 10291 mRNA_1923 0.51 -1.5
520,403 + 10291 mRNA_1923 0.59 +0.2
520,562 + 10291 mRNA_1923 0.68 -0.7
520,961 - +0.9
520,987 + +1.3
521,109 - +0.5
521,119 + -1.9
521,123 - +0.7
521,274 + +0.5
521,278 + +1.0
521,286 + -1.1
521,318 + +1.3
521,432 + +0.7
521,435 - -0.3
521,482 + +0.2
521,567 - 10292 mRNA_1924 0.12 +0.1
521,726 - 10292 mRNA_1924 0.20 +0.3
521,727 - 10292 mRNA_1924 0.20 -0.5
521,757 + 10292 mRNA_1924 0.21 -0.5
521,995 + 10292 mRNA_1924 0.32 -0.4

Or see this region's nucleotide sequence