Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1948

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10316 and 10317 are separated by 491 nucleotides mRNA_1948: 10316 - K08176 PHO84 MFS transporter, PHS family, inorganic phosphate transporter, at 580,409 to 582,858 10316 mRNA_1949: 10317 - KOG0254 Predicted transporter (major facilitator superfamily), at 583,350 to 585,589 10317

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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579,452 - +0.7
579,452 - +1.4
579,482 + +0.2
579,539 - +0.6
579,593 + -0.0
579,609 + -0.2
579,661 + +0.1
579,704 - -0.3
579,717 - -0.3
579,729 - +2.5
579,729 - +0.3
579,735 - -0.3
579,742 - +0.6
579,746 - +0.4
579,755 - +0.2
579,780 - +1.0
579,782 + +0.2
579,783 + -0.6
579,797 + +0.4
579,816 + +0.3
579,830 + +0.7
579,849 - +0.7
579,868 - +0.6
579,870 - +1.3
579,882 - -0.0
579,887 + +1.5
579,887 + -0.6
579,890 - -1.7
579,899 + +0.8
579,900 + +0.5
579,906 + -0.0
579,912 + +0.5
579,976 - -0.6
579,990 - -0.1
579,990 + +0.8
579,990 + +1.0
579,991 - -0.1
579,991 - +0.3
579,991 - -0.4
580,006 - +0.1
580,010 - +0.5
580,011 + +0.7
580,012 + -0.8
580,014 - -0.6
580,015 - +0.3
580,020 + +0.6
580,035 - -0.1
580,039 + +0.2
580,040 + +0.1
580,042 - +0.0
580,051 - +0.7
580,179 - +0.9
580,180 - -0.7
580,185 - +0.8
580,185 + -0.3
580,195 - -0.8
580,197 - +0.5
580,199 - +0.0
580,204 + +2.3
580,210 + +0.0
580,224 - -0.6
580,332 + +0.6
580,358 - +0.1
580,920 - 10316 mRNA_1948 0.21 -0.3
580,972 + 10316 mRNA_1948 0.23 -0.2
581,211 - 10316 mRNA_1948 0.33 +1.1
581,300 - 10316 mRNA_1948 0.36 -0.1
581,357 + 10316 mRNA_1948 0.39 -0.4
581,363 - 10316 mRNA_1948 0.39 +1.0
581,399 + 10316 mRNA_1948 0.40 +0.3
581,519 + 10316 mRNA_1948 0.45 -0.1
581,751 - 10316 mRNA_1948 0.55 +0.3
581,783 - 10316 mRNA_1948 0.56 -0.1
581,890 - 10316 mRNA_1948 0.60 -0.3
581,960 + 10316 mRNA_1948 0.63 -0.2
582,339 + 10316 mRNA_1948 0.79 +0.2
582,858 + +0.2
582,866 + +1.5
582,871 - +0.1
582,882 + +0.0
583,075 + +0.0
583,127 - +1.1
583,402 + +1.8
583,847 + 10317 mRNA_1949 0.22 +1.4

Or see this region's nucleotide sequence