Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1975

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10342 and 10343 are separated by 361 nucleotides10343 and 10344 are separated by 405 nucleotides mRNA_1974: 10342 - KOG4067 Uncharacterized conserved protein, at 650,254 to 651,223 10342 mRNA_1975: 10343 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 651,585 to 654,888 10343 mRNA_1976: 10344 - Hypothetical Protein, at 655,294 to 656,131 10344

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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650,995 - 10342 mRNA_1974 0.76 -0.7
651,120 + 10342 mRNA_1974 0.89 -0.4
651,143 + -0.2
651,151 + -0.8
651,151 - -0.1
651,151 - +0.6
651,168 - -0.6
651,329 - -0.3
651,333 - -0.4
651,334 + +0.4
651,341 - +0.2
651,347 - +1.0
651,487 + +0.6
651,619 + +1.3
651,654 + +0.4
651,793 + +2.0
651,924 - 10343 mRNA_1975 0.10 +1.7
652,023 + 10343 mRNA_1975 0.13 -0.4
652,048 - 10343 mRNA_1975 0.14 -0.6
652,151 - 10343 mRNA_1975 0.17 -0.1
653,068 - 10343 mRNA_1975 0.45 -0.4
653,157 + 10343 mRNA_1975 0.48 -0.2
653,497 + 10343 mRNA_1975 0.58 +1.0
653,657 + 10343 mRNA_1975 0.63 +0.6
653,661 - 10343 mRNA_1975 0.63 +0.6
654,309 + 10343 mRNA_1975 0.82 +1.4
654,315 - 10343 mRNA_1975 0.83 +0.2
654,348 - 10343 mRNA_1975 0.84 -0.1
654,624 - -0.3
654,656 - -0.7
654,920 + +0.2
655,205 + -0.0
655,376 - +1.8
655,501 - 10344 mRNA_1976 0.25 -0.4

Or see this region's nucleotide sequence