Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2040

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10407 and 10408 are separated by 333 nucleotides mRNA_2039: 10407 - KOG2895 Uncharacterized conserved protein, at 808,552 to 810,897 10407 mRNA_2040: 10408 - K11729 ACAD10 acyl-CoA dehydrogenase family member 10, at 811,231 to 813,728 10408

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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810,455 - 10407 mRNA_2039 0.81 -0.5
810,465 + 10407 mRNA_2039 0.82 -2.3
810,509 - 10407 mRNA_2039 0.83 -0.9
810,735 - -0.7
810,817 + -0.2
811,068 + +0.0
811,081 + -0.3
811,081 + +0.2
811,084 - -0.9
811,116 - +0.3
811,117 - -3.0
811,138 - -0.4
811,140 + -0.6
811,140 - +0.3
811,225 - -0.2
811,247 + +0.5
811,269 + -0.4
811,547 - 10408 mRNA_2040 0.13 -0.1
811,549 + 10408 mRNA_2040 0.13 +0.1
811,553 + 10408 mRNA_2040 0.13 +0.3
811,842 - 10408 mRNA_2040 0.24 +0.2
811,845 + 10408 mRNA_2040 0.25 -0.1
812,145 + 10408 mRNA_2040 0.37 -1.2
812,396 + 10408 mRNA_2040 0.47 -0.4
812,436 - 10408 mRNA_2040 0.48 -0.5
812,481 - 10408 mRNA_2040 0.50 -0.0
812,493 + 10408 mRNA_2040 0.51 -0.2
812,591 - 10408 mRNA_2040 0.54 +0.7
812,771 + 10408 mRNA_2040 0.62 -0.1
813,191 - 10408 mRNA_2040 0.78 +0.0
813,328 - 10408 mRNA_2040 0.84 -0.8
813,332 - 10408 mRNA_2040 0.84 -0.6
813,491 + -0.3
813,507 + -0.5
813,642 - +0.0
813,792 - +0.3
813,803 + -0.0
813,819 + +0.1
813,823 - +0.5
813,824 - +0.0
813,827 + -0.5
813,829 - -0.7
813,829 - +0.2
813,833 + +1.2
813,835 - +0.3
814,314 + +1.2

Or see this region's nucleotide sequence