Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2188

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10555 and 10556 are separated by 941 nucleotides mRNA_2187: 10555 - K09602 OTUB1 ubiquitin thioesterase protein OTUB1, at 291,957 to 293,217 10555 mRNA_2188: 10556 - Hypothetical Protein, at 294,159 to 294,788 10556

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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293,511 + +1.7
294,058 + +0.9
294,077 + -1.1
294,908 + -0.4
295,214 + +0.4
295,232 - -0.2
295,238 - -1.0
295,252 + +0.7
295,261 + +0.2
295,270 + -1.1
295,298 + +0.6
295,334 + -0.5
295,337 + -0.3
295,345 + +0.6
295,349 + -0.7
295,355 + +0.6
295,356 - +0.0
295,358 - +0.9
295,374 - +0.8
295,393 - +0.5
295,394 - +0.6
295,398 + +1.0
295,402 + -0.9
295,430 + -1.2
295,515 - +0.8
295,540 + +2.6
295,553 - +0.9
295,625 - +0.5
295,638 + -0.3
295,645 - +0.3
295,652 + +0.2
295,653 + +2.0
295,656 + +0.3
295,661 + -1.5
295,662 + +0.1
295,663 + -0.6
295,683 + +2.1
295,687 + +0.6

Or see this region's nucleotide sequence