Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2193

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10560 and 10561 are separated by 148 nucleotides10561 and 10562 are separated by 487 nucleotides mRNA_2192: 10560 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 306,918 to 310,071 10560 mRNA_2193: 10561 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 310,220 to 312,834 10561 mRNA_2194: 10562 - BLAST ER to Golgi transport-related protein, putative [Cryp..., at 313,322 to 318,107 10562

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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309,284 + 10560 mRNA_2192 0.75 -0.3
309,722 + 10560 mRNA_2192 0.89 -0.6
309,752 + 10560 mRNA_2192 0.90 +0.2
309,856 - -0.5
309,903 + -0.4
310,050 + +0.4
310,157 - -1.2
310,358 + +0.3
310,371 + +1.2
310,733 + 10561 mRNA_2193 0.20 +0.1
311,101 - 10561 mRNA_2193 0.34 +0.1
311,166 + 10561 mRNA_2193 0.36 +0.8
311,406 + 10561 mRNA_2193 0.45 +1.0
311,427 - 10561 mRNA_2193 0.46 +1.0
312,054 - 10561 mRNA_2193 0.70 -0.7
312,469 - 10561 mRNA_2193 0.86 +0.1
312,482 + 10561 mRNA_2193 0.87 +0.3
312,584 - +0.2
312,626 + +0.2
312,631 + -0.1
312,724 - +0.2
312,759 - -0.3
312,787 - +0.1
312,918 + +0.1
312,919 - +0.4
312,919 - +0.2
312,925 + -1.6
312,925 - +0.3
312,933 + +0.6
312,933 + -0.3
312,935 - +0.6
312,936 + -0.3
312,938 - -0.0
312,938 - -0.3
312,940 + +0.0
312,945 + +0.9
312,945 + -1.4
312,945 + -0.8
312,947 + +0.2
312,951 + +0.3
312,955 - -0.2
312,960 - -0.3
312,961 + -0.3
312,961 + -0.2
312,965 + +0.4
312,969 - +1.5
312,971 + -1.2
312,975 - +0.5
312,987 - -0.4
312,988 - +0.2
312,988 + -0.3
312,989 + +0.5
312,996 + -0.8
312,997 - +0.1
313,019 + +0.9
313,099 - +0.6
313,112 + +0.3
313,113 + +0.8
313,122 + -0.8
313,133 + -2.9
313,199 - -0.1
313,201 - +0.9
313,203 + +0.4
313,206 - +0.1
313,349 - -0.4
313,508 - +1.6
313,515 + +0.6
313,516 - -0.3
313,697 + -1.1

Or see this region's nucleotide sequence