Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2206

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10573 and 10574 are separated by 705 nucleotides10574 and 10575 are separated by 277 nucleotides mRNA_2205: 10573 - KOG0381 HMG box-containing protein, at 349,439 to 350,135 10573 mRNA_2206: 10574 - K20465 OSBPL9_10_11, ORP9_10_11 oxysterol-binding protein-related protein 9/10/11, at 350,841 to 352,829 10574 mRNA_2207: 10575 - K08284 MID1 calcium channel MID1, at 353,107 to 355,052 10575

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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350,216 - -2.4
350,352 - +1.9
350,362 + -1.1
350,378 - -0.0
350,381 - -1.2
350,394 + -0.4
350,395 + -0.6
350,395 - -2.2
350,415 + -0.5
350,426 - -0.7
350,433 - -0.8
350,518 - +0.3
350,521 + -0.6
350,524 - +0.6
350,536 - -0.3
350,539 - -0.8
350,540 - -0.5
350,541 + -0.3
350,543 - +0.2
350,547 + -1.2
350,548 - +0.9
350,549 - -1.6
350,555 - -0.5
350,555 + +1.4
350,556 + -0.1
350,556 - +0.2
350,560 - -0.3
350,561 + -0.8
350,565 - -0.3
350,568 - -1.3
350,572 - -0.6
350,572 - -0.1
350,573 + +0.4
350,576 - +0.2
350,578 - +0.6
350,578 - +0.3
350,580 - -0.3
350,581 + -0.4
350,584 - +1.7
350,587 + +0.2
350,587 + -0.4
350,587 + +0.4
350,587 + -1.8
350,587 + +0.8
350,587 + -0.0
350,590 + -1.2
350,594 - -0.3
350,759 - +0.3
350,764 + +0.0
350,767 - +0.2
350,771 - -0.1
350,772 - -0.2
350,794 - +0.1
350,796 - +0.9
350,799 + +0.1
350,802 + +1.8
350,804 - +1.8
350,926 - +0.7
350,928 - -0.1
350,938 - +1.3
350,946 + +2.2
350,946 - -0.0
350,952 - +0.1
350,965 - +0.8
350,967 - -0.7
351,085 - 10574 mRNA_2206 0.12 -1.0
351,087 - 10574 mRNA_2206 0.12 -0.7
351,106 - 10574 mRNA_2206 0.13 +1.4
351,235 + 10574 mRNA_2206 0.20 -0.1
351,261 - 10574 mRNA_2206 0.21 -1.6
351,396 - 10574 mRNA_2206 0.28 +0.9
351,678 + 10574 mRNA_2206 0.42 +0.2
352,263 - 10574 mRNA_2206 0.71 +0.3
352,284 + 10574 mRNA_2206 0.73 +0.2
352,440 + 10574 mRNA_2206 0.80 +0.2
352,565 - 10574 mRNA_2206 0.87 -0.4
352,566 + 10574 mRNA_2206 0.87 -0.6
352,571 + 10574 mRNA_2206 0.87 +1.1
352,818 + -0.2
352,851 + -0.3
353,002 + -0.7
353,002 + -0.1
353,025 - -0.1
353,037 - +0.8
353,046 + -0.6
353,065 + -0.2
353,325 + 10575 mRNA_2207 0.11 -0.2
353,328 + 10575 mRNA_2207 0.11 +0.3
353,346 - 10575 mRNA_2207 0.12 -0.1
353,599 - 10575 mRNA_2207 0.25 +0.1
353,755 + 10575 mRNA_2207 0.33 -1.5
353,755 - 10575 mRNA_2207 0.33 -1.7

Or see this region's nucleotide sequence