Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2226

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10593 and 10594 are separated by 586 nucleotides10594 and 10595 are separated by 123 nucleotides mRNA_2225: 10593 - Hypothetical Protein, at 403,974 to 404,899 10593 mRNA_2226: 10594 - SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717, at 405,486 to 409,218 10594 mRNA_2227: 10595 - K12392 AP1B1 AP-1 complex subunit beta-1, at 409,342 to 412,255 10595

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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404,631 + 10593 mRNA_2225 0.71 -0.4
404,634 - 10593 mRNA_2225 0.71 +1.2
404,671 + 10593 mRNA_2225 0.75 -0.5
405,099 + +0.8
405,199 - -0.1
405,356 - +0.4
405,358 + -0.5
405,368 - -0.0
405,372 + +0.7
405,395 + -0.1
405,674 - +0.7
405,801 - +0.9
406,131 - 10594 mRNA_2226 0.17 -0.4
406,272 + 10594 mRNA_2226 0.21 +0.7
406,551 - 10594 mRNA_2226 0.29 +0.2
406,563 + 10594 mRNA_2226 0.29 -0.5
407,119 - 10594 mRNA_2226 0.44 +0.2
407,276 - 10594 mRNA_2226 0.48 +0.5
409,228 - +0.4
409,239 + -0.6
409,361 - -0.3
409,364 - +0.0
409,897 + 10595 mRNA_2227 0.19 +0.8
409,919 + 10595 mRNA_2227 0.20 +0.4

Or see this region's nucleotide sequence