Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2235

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10602 and 10603 are separated by 656 nucleotides10603 and 10604 are separated by 105 nucleotides mRNA_2234: 10602 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 428,001 to 429,735 10602 mRNA_2235: 10603 - K11843 USP14, UBP6 ubiquitin carboxyl-terminal hydrolase 14, at 430,392 to 432,550 10603 mRNA_2236: 10604 - KOG3098 Uncharacterized conserved protein, at 432,656 to 434,707 10604

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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429,483 + 10602 mRNA_2234 0.85 -0.5
429,850 + +1.0
430,135 - -0.2
430,146 - +0.3
430,150 + +0.2
430,278 + +0.9
430,279 + +1.8
430,298 + -0.5
430,299 - +0.5
430,303 - +0.7
430,314 + +0.5
430,317 + +0.1
430,504 + +0.1
430,783 - 10603 mRNA_2235 0.18 +0.6
431,008 + 10603 mRNA_2235 0.29 +0.2
431,156 - 10603 mRNA_2235 0.35 -0.3
431,156 - 10603 mRNA_2235 0.35 -0.5
432,313 + 10603 mRNA_2235 0.89 -0.7
432,792 - -1.0
432,861 + +0.1
433,025 - 10604 mRNA_2236 0.18 -1.0
433,062 + 10604 mRNA_2236 0.20 +0.6

Or see this region's nucleotide sequence