Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2239

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10606 and 10607 are separated by 94 nucleotides10607 and 10608 are separated by 400 nucleotides mRNA_2238: 10606 - K20813 TDG thymine-DNA glycosylase, at 436,751 to 438,235 10606 mRNA_2239: 10607 - K18163 NDUFAF6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6, at 438,330 to 439,601 10607 mRNA_2240: 10608 - K13291 TUT terminal uridylyltransferase, at 440,002 to 443,977 10608

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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437,398 - 10606 mRNA_2238 0.44 +1.7
437,705 - 10606 mRNA_2238 0.64 -0.9
437,709 + 10606 mRNA_2238 0.65 -0.1
438,006 + 10606 mRNA_2238 0.85 +0.5
438,138 - +0.8
438,154 - -0.5
438,168 + -0.1
438,171 + +1.1
438,273 - -0.4
438,289 + -0.7
438,294 - +1.0
438,319 - -0.4
438,334 + -0.1
438,440 - +0.8
438,449 - -0.5
438,450 - -1.0
438,464 + 10607 mRNA_2239 0.11 -1.3
438,596 + 10607 mRNA_2239 0.21 +0.5
438,607 + 10607 mRNA_2239 0.22 -1.0
438,873 - 10607 mRNA_2239 0.43 -0.7
438,897 - 10607 mRNA_2239 0.45 -0.5
439,462 - 10607 mRNA_2239 0.89 +1.0
439,883 + +0.1

Or see this region's nucleotide sequence