Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2243

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10610 and 10611 are separated by 482 nucleotides10611 and 10612 are separated by 803 nucleotides mRNA_2242: 10610 - Hypothetical Protein, at 448,063 to 449,685 10610 mRNA_2243: 10611 - SUPERFAMILY--SSF52266, at 450,168 to 452,098 10611 mRNA_2244: 10612 - KOG4120 G/T mismatch-specific thymine DNA glycosylase, at 452,902 to 454,246 10612

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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449,241 + 10610 mRNA_2242 0.73 -2.0
449,423 - 10610 mRNA_2242 0.84 +1.3
449,680 + -0.3
449,698 + +0.0
449,833 + -0.2
449,996 + +0.6
450,014 - -0.8
450,306 + -0.0
450,420 + 10611 mRNA_2243 0.13 -0.9
450,572 + 10611 mRNA_2243 0.21 -0.5
450,729 - 10611 mRNA_2243 0.29 -0.7
450,858 + 10611 mRNA_2243 0.36 -0.2
450,871 - 10611 mRNA_2243 0.36 -0.7
450,980 + 10611 mRNA_2243 0.42 +0.2
451,016 + 10611 mRNA_2243 0.44 -2.3
451,610 - 10611 mRNA_2243 0.75 -0.5
451,901 - 10611 mRNA_2243 0.90 +0.2
452,007 - +0.9
452,021 - +0.1
452,036 + -0.4
452,182 - -0.6
452,193 + +0.3
452,201 + +0.3
452,214 + -2.1
452,217 + +0.3
452,220 + +0.4
452,222 + -0.1
452,226 - +0.3
452,231 + +0.0
452,241 + +1.2
452,245 + -0.3
452,264 - -0.1
452,283 - +0.4
452,286 + +0.0
452,288 + -0.3
452,294 - +0.6
452,295 + +0.0
452,298 - -0.7
452,313 - -0.6
452,339 + +0.0
452,350 - -1.1
452,359 + +0.1
452,362 + +0.3
452,372 - +0.7
452,385 - -1.2
452,388 - +0.4
452,400 + +0.5
452,409 + +0.6
452,410 - +0.9
452,415 - +0.9
452,432 - -0.8
452,441 - +1.9
452,443 + +1.8
452,445 + -0.4
452,453 - -0.1
452,458 - -0.6
452,458 - +0.2
452,460 - -1.0
452,461 - -0.2
452,475 + +0.8
452,480 + +0.9
452,480 + +0.2
452,488 - -0.4
452,490 - -0.4
452,490 - +0.8
452,495 + +0.0
452,499 + -0.2
452,499 + +0.0
452,500 + +0.9
452,503 - +2.0
452,506 - -0.4
452,506 - -0.0
452,522 - -1.4
452,522 - -0.5
452,522 - +0.2
452,540 - -0.6
452,559 + -0.3
452,578 + -0.4
452,605 + +0.4
452,623 - -0.3
452,631 + +1.0
452,631 - -0.3
452,635 + -0.5
452,649 + -0.8
452,666 - -1.4
452,773 - +0.1
452,782 + +0.1
452,798 + +0.8
452,811 + -0.3
452,917 - +0.9
452,928 + +1.2

Or see this region's nucleotide sequence