Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2251

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10618 and 10619 are separated by 403 nucleotides10619 and 10620 are separated by 262 nucleotides mRNA_2250: 10618 - HMMPfam-Apolipoprotein O-PF09769, at 464,729 to 465,798 10618 mRNA_2251: 10619 - KOG3313 Molecular chaperone Prefoldin, subunit 3, at 466,202 to 467,815 10619 mRNA_2252: 10620 - HMMPfam-Signal recognition particle 9 kDa protein (SRP9)-PF05486,SUPERFAMILY--SSF54762, at 468,078 to 468,584 10620

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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465,280 - 10618 mRNA_2250 0.51 -1.5
465,325 + 10618 mRNA_2250 0.56 +1.2
465,446 - 10618 mRNA_2250 0.67 -1.1
465,560 - 10618 mRNA_2250 0.78 -0.1
465,572 + 10618 mRNA_2250 0.79 +1.0
465,572 + 10618 mRNA_2250 0.79 -0.0
465,736 - +0.3
465,742 + -0.9
465,744 + +0.3
465,992 + +0.9
465,993 - +0.4
466,010 + +0.3
466,029 - +0.4
466,142 - -0.3
466,158 + +0.3
466,699 + 10619 mRNA_2251 0.31 +0.7
466,777 + 10619 mRNA_2251 0.36 +0.2
466,863 + 10619 mRNA_2251 0.41 +1.5
467,334 - 10619 mRNA_2251 0.70 -0.0
467,748 + -0.9
467,759 + +0.9
467,802 + +0.9
467,916 - +1.3
468,036 - -1.5
468,206 - 10620 mRNA_2252 0.25 -0.2
468,629 + -1.4
468,794 + -0.2

Or see this region's nucleotide sequence