Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2273

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10640 and 10641 are separated by 442 nucleotides10641 and 10642 are separated by 146 nucleotides mRNA_2272: 10640 - Hypothetical Protein, at 495,737 to 495,928 10640 mRNA_2273: 10641 - K14787 MRD1, RBM19 multiple RNA-binding domain-containing protein 1, at 496,371 to 499,098 10641 mRNA_2274: 10642 - KOG2352 Predicted spermine/spermidine synthase, at 499,245 to 500,264 10642

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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496,054 - -1.3
496,056 - -1.7
496,361 + -1.3
499,152 + -0.1
499,162 + -1.0
499,167 - +0.1
499,169 - -1.0
499,171 + +0.5
499,173 - +0.1
499,195 - -1.1
499,203 + -0.8
499,239 + +0.8
499,353 + 10642 mRNA_2274 0.11 +0.3
499,608 - 10642 mRNA_2274 0.36 +0.5
499,615 + 10642 mRNA_2274 0.36 +1.1
499,625 - 10642 mRNA_2274 0.37 -0.6
499,912 + 10642 mRNA_2274 0.65 -0.2
500,061 - 10642 mRNA_2274 0.80 +0.1
500,071 - 10642 mRNA_2274 0.81 -0.1

Or see this region's nucleotide sequence