Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2387

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10754 and 10755 are separated by 196 nucleotides mRNA_2386: 10754 - K01530 E3.6.3.1 phospholipid-translocating ATPase, at 769,770 to 774,280 10754 mRNA_2387: 10755 - K17781 TIM13 mitochondrial import inner membrane translocase subunit TIM13, at 774,477 to 775,750 10755

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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773,553 + 10754 mRNA_2386 0.84 +0.5
773,580 + 10754 mRNA_2386 0.84 +0.4
774,285 - +0.1
774,323 + -1.0
774,501 + -1.3
774,883 - 10755 mRNA_2387 0.32 -0.5
774,884 + 10755 mRNA_2387 0.32 -1.5
775,177 - 10755 mRNA_2387 0.55 +1.2
775,260 + 10755 mRNA_2387 0.61 -0.3
775,323 + 10755 mRNA_2387 0.66 -0.4
775,324 - 10755 mRNA_2387 0.66 +0.9
775,338 + 10755 mRNA_2387 0.68 -0.5
775,340 - 10755 mRNA_2387 0.68 +0.8
776,038 + +0.0
776,054 - -0.7
776,488 + +0.5
776,599 - -0.6

Or see this region's nucleotide sequence