Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2456

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10823 and 10824 are separated by 226 nucleotides mRNA_2455: 10823 - K16912 LAS1 ribosomal biogenesis protein LAS1, at 172,733 to 174,671 10823 mRNA_2456: 10824 - Hypothetical Protein, at 174,898 to 175,908 10824

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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174,748 + +0.7
174,871 + -0.4
175,618 + 10824 mRNA_2456 0.71 -0.5
176,036 - +1.2
176,044 + +0.4
176,045 + -1.0
176,051 - +0.8
176,056 + +0.1
176,059 + -0.8
176,063 + -1.7
176,072 + -0.0
176,195 - +0.2
176,212 - +2.2
176,219 + +0.1
176,339 - +0.2
176,341 + +0.0
176,367 - +0.4
176,475 - +0.5
176,503 + -0.3
176,504 + +0.4
176,592 + -0.3
176,771 - -0.4
176,777 + +0.0
176,809 + +1.2

Or see this region's nucleotide sequence