Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2489

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10856 and 10857 are separated by 393 nucleotides10857 and 10858 are separated by 658 nucleotides mRNA_2488: 10856 - KOG1804 RNA helicase, at 267,770 to 269,827 10856 mRNA_2489: 10857 - HMMPfam-Surfeit locus protein 5 subunit 22 of Mediator complex-PF06179, at 270,221 to 270,948 10857 mRNA_2490: 10858 - K14297 NUP98, ADAR2, NUP116 nuclear pore complex protein Nup98-Nup96, at 271,607 to 274,886 10858

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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269,225 - 10856 mRNA_2488 0.71 +0.1
269,389 + 10856 mRNA_2488 0.79 +0.1
269,405 - 10856 mRNA_2488 0.79 -0.6
269,485 + 10856 mRNA_2488 0.83 +0.3
269,537 - 10856 mRNA_2488 0.86 +0.8
269,823 + -0.5
269,829 - -0.3
269,833 + -0.1
269,888 + -0.6
270,107 - -1.6
270,182 + +0.8
271,030 + -0.7
271,458 + +0.1
271,474 + +0.0
271,491 + +0.6
271,495 + -0.2
271,632 - +0.1
271,735 - -0.4

Or see this region's nucleotide sequence