Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2491

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10858 and 10859 are separated by 202 nucleotides10859 and 10860 are separated by 239 nucleotides mRNA_2490: 10858 - K14297 NUP98, ADAR2, NUP116 nuclear pore complex protein Nup98-Nup96, at 271,607 to 274,886 10858 mRNA_2491: 10859 - K12837 U2AF2 splicing factor U2AF 65 kDa subunit, at 275,089 to 277,521 10859 mRNA_2492: 10860 - HMMPfam-Rsm1-like-PF08600, at 277,761 to 278,480 10860

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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274,949 - -0.4
277,545 - +0.3
277,689 - -0.1
277,701 + +0.2
277,816 - -0.9
278,024 + 10860 mRNA_2492 0.37 -0.3
278,177 - 10860 mRNA_2492 0.58 +0.3

Or see this region's nucleotide sequence