Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2499

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10867 and 10868 are separated by 569 nucleotides mRNA_2499: 10867 - BLAST secreted protein [Moniliophthora roreri MCA 2997], at 297,402 to 298,448 10867 mRNA_2500: 10868 - Hypothetical Protein, at 299,018 to 301,561 10868

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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296,509 - -0.1
296,512 + -1.5
296,517 + -0.2
296,526 - -1.9
296,529 - +1.8
296,539 - -1.1
296,624 - +0.5
296,639 - -0.8
296,719 - +0.7
296,781 - -0.9
296,792 - -0.4
296,794 + +0.2
296,811 + -0.5
296,816 - +1.1
296,821 - -0.2
296,824 + -0.0
296,932 + -0.6
296,945 - +1.0
296,945 - -0.6
296,948 + +0.6
296,948 - +0.0
296,949 + +0.1
296,952 - +0.4
296,953 + +0.0
296,955 - -1.6
296,957 + -1.4
296,960 + -0.6
296,967 - +0.1
296,973 - +0.4
296,980 - +0.8
296,986 + +1.2
296,993 - +1.0
296,997 + +0.0
297,001 + +1.1
297,024 + -0.6
297,054 - -0.4
297,088 - +0.5
297,097 - +2.1
297,128 + -0.2
297,139 + +0.7
297,146 - +0.1
297,154 + +0.3
297,271 - -0.7
297,281 - -1.3
297,289 - +0.5
297,290 + +0.4
297,290 + -1.0
297,299 + -0.4
297,337 - +0.5
297,418 - +1.1
297,441 + -0.9
297,464 + -0.8
297,570 + 10867 mRNA_2499 0.16 +0.8
297,579 - 10867 mRNA_2499 0.17 -0.7
297,741 + 10867 mRNA_2499 0.32 -0.1
297,751 - 10867 mRNA_2499 0.33 -0.8
298,505 + +0.1
298,633 + +0.5
298,760 + -0.6
298,761 + +0.5
298,802 + -0.6
298,802 + +0.3
298,932 + +0.4
298,942 + -0.1
298,947 + +0.4
299,263 + +0.2

Or see this region's nucleotide sequence