Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2572

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10939 and 10940 overlap by 32 nucleotides10940 and 10941 are separated by 196 nucleotides mRNA_2571: 10939 - HMMPfam-Methyltransferase domain-PF13679, at 470,466 to 472,507 10939 mRNA_2572: 10940 - K13093 HTATSF1 HIV Tat-specific factor 1, at 472,476 to 474,035 10940 mRNA_2573: 10941 - K03848 ALG6 alpha-1,3-glucosyltransferase, at 474,232 to 477,732 10941

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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471,504 + 10939 mRNA_2571 0.51 +0.3
471,909 + 10939 mRNA_2571 0.71 -0.2
472,058 + 10939 mRNA_2571 0.78 -0.7
472,092 - 10939 mRNA_2571 0.80 -0.8
472,180 + 10939 mRNA_2571 0.84 -0.1
472,192 - 10939 mRNA_2571 0.85 +0.2
472,207 - 10939 mRNA_2571 0.85 -0.4
472,335 - -0.4
472,355 - +0.1
472,357 + -1.0
472,488 - +0.2
474,079 - +0.3
474,204 - -0.8
474,360 - -0.2
474,374 - +0.6
474,386 - -0.2
474,392 + +0.2
474,668 - 10941 mRNA_2573 0.12 +0.5
474,788 + 10941 mRNA_2573 0.16 -0.8
474,791 - 10941 mRNA_2573 0.16 +0.4
474,808 + 10941 mRNA_2573 0.16 -0.5
474,820 - 10941 mRNA_2573 0.17 +0.1
474,836 + 10941 mRNA_2573 0.17 +0.3
474,965 - 10941 mRNA_2573 0.21 -0.2
474,982 + 10941 mRNA_2573 0.21 -0.7
474,983 + 10941 mRNA_2573 0.21 +1.0

Or see this region's nucleotide sequence