Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2653

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11020 and 11021 are separated by 559 nucleotides mRNA_2652: 11020 - Hypothetical Protein, at 680,993 to 681,631 11020 mRNA_2653: 11021 - K15040 VDAC2 voltage-dependent anion channel protein 2, at 682,191 to 683,966 11021

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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681,495 + 11020 mRNA_2652 0.79 +0.9
681,673 + -1.0
681,685 - -0.1
681,694 + +0.5
681,725 - -0.2
681,769 + +0.4
681,786 + +0.1
681,801 - +0.1
681,866 + +0.6
681,935 - +0.3
681,952 + +0.3
681,966 - -0.8
683,984 - +0.9
683,994 - +0.2
684,007 - -0.4
684,009 - +0.3
684,012 - -0.7
684,020 + -0.6
684,025 - -0.4
684,030 + -1.4
684,032 - -0.4
684,037 + -0.4
684,038 - -0.3
684,043 + +0.4
684,122 - +1.0
684,149 + -0.2
684,181 - +1.5
684,182 - +0.2
684,312 - +1.3
684,328 + -0.5
684,329 - +1.1
684,475 - +0.3
684,480 + -1.3
684,588 + -0.9
684,596 - +0.1
684,774 - -0.6
684,903 + -1.0
684,903 - -0.7
684,906 + +0.1
684,907 + +1.1
684,922 + +0.2
684,923 - -0.2
684,935 + +1.6

Or see this region's nucleotide sequence