Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2676

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_2676: 11044 - K06672 SCC2, NIPBL cohesin loading factor subunit SCC2, at 747,032 to 753,386 11044

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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746,095 + -0.5
746,104 + +0.0
746,110 - +1.7
746,124 + +1.4
746,151 + -0.3
746,167 + -1.2
746,170 - +0.0
746,248 - -1.4
746,257 + +0.3
746,264 + +0.2
746,276 + +0.3
746,276 - +0.5
746,277 + +0.9
746,278 - -0.1
746,288 - -0.8
746,314 + -0.3
751,553 - 11044 mRNA_2676 0.71 -0.1
754,078 + +0.7
754,088 + +0.3
754,263 - +0.4
754,285 + +0.1
754,321 - -0.2
754,322 - +0.3
754,328 - -0.2
754,332 - +0.3
754,353 + -0.9
754,357 - -0.4
754,379 + +0.3

Or see this region's nucleotide sequence