Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2707

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11074 and 11075 are separated by 445 nucleotides mRNA_2706: 11074 - HMMPfam-PLAC8 family-PF04749,TIGRFAM-A_thal_Cys_rich uncharacterized Cys-rich domain-TIGR01571, at 47,300 to 48,078 11074 mRNA_2707: 11075 - KOG0254 Predicted transporter (major facilitator superfamily), at 48,524 to 50,718 11075

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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47,582 + 11074 mRNA_2706 0.36 -0.4
47,717 + 11074 mRNA_2706 0.54 +0.4
47,950 - 11074 mRNA_2706 0.83 -0.3
47,966 + 11074 mRNA_2706 0.85 -1.3
48,263 + -0.1
48,325 - +0.6
48,540 + -4.4
48,700 - +0.3
49,112 + 11075 mRNA_2707 0.27 -3.7
49,249 + 11075 mRNA_2707 0.33 -5.9
49,360 + 11075 mRNA_2707 0.38 -2.5
49,380 - 11075 mRNA_2707 0.39 -4.7
49,408 + 11075 mRNA_2707 0.40 +0.0
49,687 - 11075 mRNA_2707 0.53 -5.4
49,700 - 11075 mRNA_2707 0.54 -5.9
49,706 + 11075 mRNA_2707 0.54 -3.4
49,810 - 11075 mRNA_2707 0.59 -1.9
49,967 + 11075 mRNA_2707 0.66 -4.2
50,124 - 11075 mRNA_2707 0.73 -2.8
50,294 - 11075 mRNA_2707 0.81 -2.4
50,377 - 11075 mRNA_2707 0.84 +0.0
50,406 + 11075 mRNA_2707 0.86 -3.4
50,429 - 11075 mRNA_2707 0.87 -1.4
50,442 - 11075 mRNA_2707 0.87 -1.6
50,546 - -2.7
50,552 - -2.6
50,701 - -0.5
50,812 - -4.8
50,826 - -4.0
50,855 - -4.7
50,856 - -2.8
50,857 - -3.3
50,861 + -3.4
50,874 - -1.4
50,875 - -1.5
50,877 - -2.5
50,912 + -3.1
51,005 - +0.7
51,018 - +0.1
51,025 + +1.1
51,027 + -0.5
51,043 + -0.5
51,050 + -0.1
51,050 + -0.1
51,058 + +0.1
51,062 + -0.6
51,080 - +1.2
51,086 - -0.6
51,116 - +2.0
51,171 - -0.3
51,183 - -0.0
51,188 + +1.7
51,190 + +0.2
51,346 + +0.3
51,489 - -0.2
51,522 - +0.1
51,711 + -2.1

Or see this region's nucleotide sequence