Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2713

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11080 and 11081 are separated by 189 nucleotides mRNA_2712: 11080 - KOG4648 Uncharacterized conserved protein, contains LRR repeats, at 58,923 to 60,414 11080 mRNA_2713: 11081 - BLAST Clp1-like protein, putative [Rhizoctonia solani AG-3 ..., at 60,604 to 61,559 11081

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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59,650 - 11080 mRNA_2712 0.49 -0.3
59,772 - 11080 mRNA_2712 0.57 +0.7
60,232 - 11080 mRNA_2712 0.88 -0.4
60,480 - +0.8
60,723 + 11081 mRNA_2713 0.12 -0.1
61,348 - 11081 mRNA_2713 0.78 +0.7
61,497 - +0.0
61,647 - -0.1
61,779 - +0.3
61,811 + +1.2
61,828 + +1.4
61,835 + -0.1
61,884 - -0.6
61,899 - -0.3
61,928 + -0.3
61,942 + +0.2
61,969 - -0.1
61,978 - -0.1
62,019 + +0.8
62,039 - -0.1
62,043 - -0.4
62,045 + -0.4
62,049 - -0.6
62,075 + -1.0
62,078 - +0.0
62,189 + +0.7
62,245 - -1.1
62,247 - +0.5
62,277 + +0.2
62,278 + -0.9
62,283 + +0.8
62,342 + +0.1
62,355 - +0.1
62,378 + -0.0
62,383 - -0.4
62,389 + -0.6
62,390 - -0.6
62,396 - -0.0
62,398 - +0.1
62,399 - +1.2
62,406 + -0.8
62,407 + -0.2
62,410 + -0.1
62,413 + -0.2
62,416 + +0.3
62,422 + +1.1
62,427 + +0.3
62,428 - -0.3
62,432 + -0.2
62,505 - -0.6
62,512 - +0.1
62,515 - +0.2
62,533 + -0.1
62,536 - -0.0
62,546 + +0.0
62,557 + -0.1

Or see this region's nucleotide sequence