Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2722

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11089 and 11090 are separated by 200 nucleotides11090 and 11091 are separated by 329 nucleotides mRNA_2721: 11089 - BLAST metallophosphoesterase domain-containing protein [Muc..., at 76,876 to 78,981 11089 mRNA_2722: 11090 - KOG4117 Heat shock factor binding protein, at 79,182 to 79,739 11090 mRNA_2723: 11091 - K03258 EIF4B translation initiation factor 4B, at 80,069 to 82,121 11091

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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78,338 + 11089 mRNA_2721 0.69 +0.5
78,389 - 11089 mRNA_2721 0.72 +0.1
78,518 - 11089 mRNA_2721 0.78 +0.2
78,956 - +0.4
78,958 - +0.5
78,980 + +0.3
79,093 - -1.0
79,681 + 11090 mRNA_2722 0.89 -0.7
79,722 - -0.1
79,982 - +0.6
80,017 - +0.2

Or see this region's nucleotide sequence