Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2724

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11091 and 11092 are separated by 164 nucleotides11092 and 11093 are separated by 705 nucleotides mRNA_2723: 11091 - K03258 EIF4B translation initiation factor 4B, at 80,069 to 82,121 11091 mRNA_2724: 11092 - HMMPfam-Ribosomal protein L30p/L7e-PF00327,SUPERFAMILY--SSF55129, at 82,286 to 82,840 11092 mRNA_2725: 11093 - HMMPfam-NADH-ubiquinone reductase complex 1 MLRQ subunit-PF06522, at 83,546 to 84,542 11093

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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82,055 + -1.3
82,180 - +0.1
82,935 - -1.0
82,948 - -0.8
83,202 - +0.7
83,215 - -1.0
83,218 - +1.2
83,402 - +1.2
83,522 - +0.2
83,686 + 11093 mRNA_2725 0.14 -0.0
83,690 - 11093 mRNA_2725 0.14 +0.3

Or see this region's nucleotide sequence