Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2779

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11146 and 11147 are separated by 129 nucleotides mRNA_2778: 11146 - K15264 NSUN5, WBSCR20 putative methyltransferase, at 188,984 to 191,295 11146 mRNA_2779: 11147 - K18278 THI5 pyrimidine precursor biosynthesis enzyme, at 191,425 to 193,018 11147

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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190,735 + 11146 mRNA_2778 0.76 +2.0
190,941 - 11146 mRNA_2778 0.85 -0.4
190,942 + 11146 mRNA_2778 0.85 -0.4
190,964 - 11146 mRNA_2778 0.86 -0.9
190,970 + 11146 mRNA_2778 0.86 +0.0
191,153 - -1.6
191,153 + +0.0
191,161 + -0.4
191,319 + +1.0
191,320 - -0.6
191,348 - +0.1
191,430 - +0.9
191,441 - +0.1
191,552 + +0.1
191,580 - +1.3
191,763 + 11147 mRNA_2779 0.21 -0.0
191,794 + 11147 mRNA_2779 0.23 -0.7
192,023 - 11147 mRNA_2779 0.38 -0.6
192,129 + 11147 mRNA_2779 0.44 +0.4
192,420 + 11147 mRNA_2779 0.62 -0.1
192,733 - 11147 mRNA_2779 0.82 +1.4
192,852 - 11147 mRNA_2779 0.90 -0.5
192,990 + +0.9
192,990 + -0.7
192,995 - +1.9
193,008 + -0.3
193,018 - -0.1
193,021 + +0.5
193,052 + +0.6
193,120 + -0.2
193,253 + +0.2
193,285 - +0.8
193,308 + -0.5
193,309 - -0.1
193,310 - +0.9
193,318 + -0.5
193,321 - -0.2
193,330 + -0.5
193,383 - -1.0
193,384 + +0.1
193,391 + -1.5
193,397 - -0.3
193,397 - -0.4
193,404 + -0.9
193,414 - +1.1
193,435 - -0.8
193,462 - -0.4
193,478 - -0.1
193,480 - -0.1
193,489 - -0.9
193,522 - -0.2
193,529 + -1.0
193,543 + +0.2
193,563 + +0.7
193,573 - -0.5
193,578 + +0.2
193,578 + +0.1
193,582 + -0.8
193,600 + +0.9
193,615 - -1.3
193,621 + -0.7
193,622 + +0.0
193,623 + +0.0
193,703 + -0.1
193,745 + -1.3
193,749 + +0.2
193,875 - -0.6
193,900 + -0.2

Or see this region's nucleotide sequence