Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2805

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11172 and 11173 are separated by 373 nucleotides11173 and 11174 are separated by 168 nucleotides mRNA_2804: 11172 - K10808 RRM2 ribonucleoside-diphosphate reductase subunit M2, at 257,436 to 258,912 11172 mRNA_2805: 11173 - KOG0128 RNA-binding protein SART3 (RRM superfamily), at 259,286 to 263,641 11173 mRNA_2806: 11174 - Hypothetical Protein, at 263,810 to 265,112 11174

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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258,677 - 11172 mRNA_2804 0.84 +0.1
258,701 - 11172 mRNA_2804 0.86 -0.1
258,812 + -1.4
258,814 - -1.0
258,820 + -0.6
259,091 - +0.5
259,096 - +0.3
259,100 + -0.3
259,116 - -0.3
259,128 + +0.5
259,146 + +0.7
259,151 - -1.1
259,203 + -0.6
259,255 - -0.2
259,283 + -0.2
263,764 - -0.2
264,265 - 11174 mRNA_2806 0.35 -0.3
264,286 - 11174 mRNA_2806 0.37 +0.3
264,300 - 11174 mRNA_2806 0.38 -1.0
264,335 + 11174 mRNA_2806 0.40 -0.4
264,346 + 11174 mRNA_2806 0.41 -0.1
264,348 - 11174 mRNA_2806 0.41 +0.6
264,476 + 11174 mRNA_2806 0.51 -0.2
264,577 - 11174 mRNA_2806 0.59 +1.0

Or see this region's nucleotide sequence