Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2809

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11176 and 11177 are separated by 434 nucleotides11177 and 11178 are separated by 185 nucleotides mRNA_2808: 11176 - KOG4539 Uncharacterized conserved protein, at 269,906 to 271,117 11176 mRNA_2809: 11177 - K08596 SENP7 sentrin-specific protease 7, at 271,552 to 278,521 11177 mRNA_2810: 11178 - K00026 MDH2 malate dehydrogenase, at 278,707 to 280,370 11178

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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270,594 + 11176 mRNA_2808 0.57 +1.5
270,639 - 11176 mRNA_2808 0.60 +0.3
271,064 + +0.2
271,078 + +0.6
271,204 - +0.8
271,223 + +0.4
271,356 + -0.7
271,363 - +0.2
271,512 + -0.1
271,552 - -0.2
271,786 - +1.4
272,341 + 11177 mRNA_2809 0.11 -0.3
272,537 + 11177 mRNA_2809 0.14 -0.3
272,545 - 11177 mRNA_2809 0.14 -0.1
272,657 + 11177 mRNA_2809 0.16 -1.0
272,671 - 11177 mRNA_2809 0.16 -0.0
272,703 + 11177 mRNA_2809 0.17 +0.1
272,955 - 11177 mRNA_2809 0.20 +1.2
277,360 + 11177 mRNA_2809 0.83 +0.7
278,171 - +0.9
278,394 + -1.3
278,467 + -0.8
278,552 + +0.3
278,665 + +0.9
278,689 + +0.8
278,703 + -0.1

Or see this region's nucleotide sequence