Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2819

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11186 and 11187 are separated by 223 nucleotides11187 and 11188 are separated by 188 nucleotides mRNA_2818: 11186 - K02178 BUB1 checkpoint serine/threonine-protein kinase, at 292,080 to 296,876 11186 mRNA_2819: 11187 - HMMPfam-linker histone H1 and H5 family-PF00538,ProSiteProfiles-Linker histone H1/H5 globular (H15) domain profile.-PS51504,SUPERFAMILY--SSF46785, at 297,100 to 297,771 11187 mRNA_2820: 11188 - HMMPfam-2-oxoacid dehydrogenases acyltransferase (catalytic domain)-PF00198,HMMPfam-Biotin-requiring enzyme-PF00364,HMMPfam-e3 binding domain-PF02817,SUPERFAMILY--SSF47005,SUPERFAMILY--SSF51230,SUPERFAMILY--SSF52777, at 297,960 to 299,453 11188

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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296,160 - 11186 mRNA_2818 0.85 +0.5
296,871 + +1.5
296,989 - +0.1
297,018 + -0.2
297,018 - +0.5
297,436 - 11187 mRNA_2819 0.50 +0.6
297,439 - 11187 mRNA_2819 0.50 -1.6
297,456 + 11187 mRNA_2819 0.53 -0.2
297,479 + 11187 mRNA_2819 0.56 +0.4
297,862 + -0.3
297,966 + +0.1
298,039 + +0.5
298,068 + -0.4
298,144 - 11188 mRNA_2820 0.12 -1.1

Or see this region's nucleotide sequence