Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2836

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11203 and 11204 are separated by 324 nucleotides11204 and 11205 are separated by 178 nucleotides mRNA_2835: 11203 - K00022 HADH 3-hydroxyacyl-CoA dehydrogenase, at 326,503 to 328,205 11203 mRNA_2836: 11204 - HMMPfam-Putative zinc finger motif, C2HC5-type-PF06221, at 328,530 to 330,386 11204 mRNA_2837: 11205 - KOG4100 Uncharacterized conserved protein, at 330,565 to 331,429 11205

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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327,760 + 11203 mRNA_2835 0.74 -0.4
328,040 - -0.8
328,046 + -0.4
328,210 - -0.2
328,334 - -0.0
328,352 + +2.9
328,355 + +1.9
328,396 + -2.0
328,432 - -0.5
328,477 - +0.2
328,519 + +0.1
328,772 - 11204 mRNA_2836 0.13 +0.1
328,898 - 11204 mRNA_2836 0.20 +0.6
328,911 + 11204 mRNA_2836 0.21 +1.5
328,926 - 11204 mRNA_2836 0.21 +0.8
329,068 + 11204 mRNA_2836 0.29 -0.1
329,322 - 11204 mRNA_2836 0.43 -1.6
329,472 + 11204 mRNA_2836 0.51 +0.1
329,821 + 11204 mRNA_2836 0.70 -0.6
330,525 + +0.2
330,675 - 11205 mRNA_2837 0.13 +1.5
330,684 - 11205 mRNA_2837 0.14 -0.4
330,813 - 11205 mRNA_2837 0.29 -0.5
330,974 - 11205 mRNA_2837 0.47 -0.5

Or see this region's nucleotide sequence