Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2844

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11211 and 11212 are separated by 436 nucleotides11212 and 11213 are separated by 192 nucleotides mRNA_2843: 11211 - Hypothetical Protein, at 343,923 to 345,879 11211 mRNA_2844: 11212 - SUPERFAMILY--SSF54427, at 346,316 to 346,839 11212 mRNA_2845: 11213 - K14767 UTP3, SAS10 U3 small nucleolar RNA-associated protein 3, at 347,032 to 349,782 11213

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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345,319 - 11211 mRNA_2843 0.71 +0.5
345,369 + 11211 mRNA_2843 0.74 -1.2
345,701 - -0.9
346,018 - +0.5
346,185 - +0.6
346,196 + +0.3
346,241 + +2.2
346,512 - 11212 mRNA_2844 0.37 -0.1
346,535 + 11212 mRNA_2844 0.42 +0.0
346,685 + 11212 mRNA_2844 0.70 +0.2
346,802 - -0.2
346,823 - +0.3

Or see this region's nucleotide sequence