Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2898

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11265 and 11266 are separated by 106 nucleotides11266 and 11267 are separated by 437 nucleotides mRNA_2897: 11265 - K12613 DCP2 mRNA-decapping enzyme subunit 2, at 479,604 to 482,899 11265 mRNA_2898: 11266 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 483,006 to 488,500 11266 mRNA_2899: 11267 - K15276 SLC35B2, PAPST1 solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2, at 488,938 to 492,084 11267

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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482,083 - 11265 mRNA_2897 0.75 +0.4
482,400 + 11265 mRNA_2897 0.85 +1.3
482,553 + 11265 mRNA_2897 0.89 -0.1
482,737 + +0.0
482,761 + -0.3
483,214 + +1.6
483,340 + +0.7
483,425 + +0.4
483,430 - -0.3
483,566 - 11266 mRNA_2898 0.10 +0.3
483,572 + 11266 mRNA_2898 0.10 +0.0
483,583 - 11266 mRNA_2898 0.11 -0.1
483,706 + 11266 mRNA_2898 0.13 -0.2
483,911 - 11266 mRNA_2898 0.16 +0.1
483,990 + 11266 mRNA_2898 0.18 +0.4
484,433 + 11266 mRNA_2898 0.26 -0.2
484,529 + 11266 mRNA_2898 0.28 -1.5
484,573 - 11266 mRNA_2898 0.29 +0.1
484,584 + 11266 mRNA_2898 0.29 +1.2
484,730 + 11266 mRNA_2898 0.31 +0.1
484,894 + 11266 mRNA_2898 0.34 -0.0
484,992 + 11266 mRNA_2898 0.36 +0.5
485,157 + 11266 mRNA_2898 0.39 +0.1
485,163 + 11266 mRNA_2898 0.39 -1.0
485,292 + 11266 mRNA_2898 0.42 +0.8
485,498 + 11266 mRNA_2898 0.45 -0.5
485,617 + 11266 mRNA_2898 0.48 +0.6
485,899 - 11266 mRNA_2898 0.53 +0.1
485,902 + 11266 mRNA_2898 0.53 +0.5
486,134 - 11266 mRNA_2898 0.57 +0.2
486,167 - 11266 mRNA_2898 0.58 +0.2
486,513 + 11266 mRNA_2898 0.64 +0.6
486,786 - 11266 mRNA_2898 0.69 +0.2
486,789 + 11266 mRNA_2898 0.69 -1.4
486,950 + 11266 mRNA_2898 0.72 +0.2
487,069 + 11266 mRNA_2898 0.74 +0.2
487,357 + 11266 mRNA_2898 0.79 -0.6
487,501 + 11266 mRNA_2898 0.82 -0.7
487,716 - 11266 mRNA_2898 0.86 +1.2
487,813 - 11266 mRNA_2898 0.87 +0.4
487,989 - -1.2
488,154 + -0.1
488,224 - -0.0
488,235 - -0.2
488,262 + -1.0
488,372 - -0.6
488,389 + -0.2
488,506 - +0.3
488,521 + +0.3
488,534 + +1.4
488,556 + +0.4
488,650 - -0.8
488,712 - +0.1
488,719 + -0.6
488,766 + -1.4
488,806 + -0.5
488,807 - -0.5
488,935 - -0.1
488,937 + +0.4
488,969 - -0.3
488,970 + -0.2
488,997 + +0.7
489,000 + -1.0
489,038 - -0.5

Or see this region's nucleotide sequence