Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2923

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11290 and 11291 are separated by 276 nucleotides11291 and 11292 are separated by 242 nucleotides mRNA_2922: 11290 - K10807 RRM1 ribonucleoside-diphosphate reductase subunit M1, at 564,601 to 568,377 11290 mRNA_2923: 11291 - Hypothetical Protein, at 568,654 to 569,537 11291 mRNA_2924: 11292 - K11663 ZNHIT1, VPS71 zinc finger HIT domain-containing protein 1, at 569,780 to 570,412 11292

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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568,419 + +0.4
568,749 + 11291 mRNA_2923 0.11 -0.3
568,772 + 11291 mRNA_2923 0.13 -1.0
568,783 + 11291 mRNA_2923 0.15 +0.6
568,890 - 11291 mRNA_2923 0.27 -0.0
569,048 + 11291 mRNA_2923 0.45 +0.6
569,628 - +0.7
569,738 + -0.6
569,754 + -0.0
570,474 + +0.0
570,518 + +0.5
570,518 + -0.1

Or see this region's nucleotide sequence