Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2948

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11315 and 11316 are separated by 278 nucleotides11316 and 11317 are separated by 617 nucleotides mRNA_2947: 11315 - Hypothetical Protein, at 622,694 to 625,091 11315 mRNA_2948: 11316 - K12817 PRPF18, PRP18 pre-mRNA-splicing factor 18, at 625,370 to 627,125 11316 mRNA_2949: 11317 - K02267 COX6B cytochrome c oxidase subunit 6b, at 627,743 to 628,552 11317

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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624,612 - 11315 mRNA_2947 0.80 -1.5
624,684 - 11315 mRNA_2947 0.83 -0.9
624,704 - 11315 mRNA_2947 0.84 -0.2
624,707 + 11315 mRNA_2947 0.84 +0.1
624,824 - 11315 mRNA_2947 0.89 +1.1
624,856 - -0.5
624,868 - +0.0
624,870 + -1.2
625,017 - +1.7
625,246 + +0.1
625,404 - +0.0
627,196 - +0.6
627,208 - +0.8
627,213 - -1.1
627,215 + +1.3
627,217 + +0.8
627,218 + -0.7
627,224 + +0.4
627,341 - -2.3
627,347 - -0.9
627,353 - +0.2
627,354 + -1.0
627,361 + -2.4
627,374 + -2.0
627,379 + -0.3
627,517 + -0.3
627,533 + -0.9
627,643 - -0.1
627,644 - -3.0
627,670 + -0.8
627,949 + 11317 mRNA_2949 0.25 -0.7
627,949 - 11317 mRNA_2949 0.25 -1.4
627,953 - 11317 mRNA_2949 0.26 -0.3
628,022 + 11317 mRNA_2949 0.34 +0.3

Or see this region's nucleotide sequence