Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3001

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11368 and 11369 are separated by 292 nucleotides11369 and 11370 are separated by 43 nucleotides mRNA_3000: 11368 - K15528 FAAH fatty acid amide hydrolase, at 45,858 to 47,909 11368 mRNA_3001: 11369 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 48,202 to 49,332 11369 mRNA_3002: 11370 - HMMPfam-Fungal specific transcription factor domain-PF11951, at 49,376 to 50,038 11370

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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47,244 - 11368 mRNA_3000 0.68 +1.1
47,246 + 11368 mRNA_3000 0.68 -0.4
47,362 + 11368 mRNA_3000 0.73 -0.8
47,437 + 11368 mRNA_3000 0.77 +0.1
47,506 + 11368 mRNA_3000 0.80 -0.0
47,598 - 11368 mRNA_3000 0.85 -0.1
47,608 + 11368 mRNA_3000 0.85 -0.1
47,655 - 11368 mRNA_3000 0.88 +0.5
47,730 - -0.0
47,739 + +1.2
47,759 - -0.0
47,867 + +0.0
47,901 + +1.4
47,963 + +0.7
48,035 + +0.7
48,037 - +0.3
48,037 - -0.6
48,062 - +0.0
48,075 - -0.9
48,084 - +1.1
48,085 + +1.3
48,197 - +0.0
48,226 - +0.4
48,227 + -1.6
48,284 + -0.4
48,355 - 11369 mRNA_3001 0.14 +1.5
48,381 - 11369 mRNA_3001 0.16 -0.6
48,387 + 11369 mRNA_3001 0.16 +0.1
48,388 - 11369 mRNA_3001 0.16 +0.4
48,405 - 11369 mRNA_3001 0.18 -0.2
48,405 + 11369 mRNA_3001 0.18 -0.8
48,412 + 11369 mRNA_3001 0.19 +0.7
48,414 - 11369 mRNA_3001 0.19 -0.7
48,418 + 11369 mRNA_3001 0.19 -1.2
48,434 + 11369 mRNA_3001 0.21 +0.7
48,489 + 11369 mRNA_3001 0.25 -0.9
48,497 - 11369 mRNA_3001 0.26 +1.1
48,617 + 11369 mRNA_3001 0.37 +1.0
48,686 + 11369 mRNA_3001 0.43 +0.8
48,690 - 11369 mRNA_3001 0.43 -0.5
48,778 - 11369 mRNA_3001 0.51 +1.3
49,097 - 11369 mRNA_3001 0.79 -0.4
49,150 - 11369 mRNA_3001 0.84 +0.3
49,152 + 11369 mRNA_3001 0.84 +1.0
49,371 + -0.1
49,518 + 11370 mRNA_3002 0.21 -0.1
49,693 - 11370 mRNA_3002 0.48 +0.6
49,694 + 11370 mRNA_3002 0.48 -0.3
49,833 - 11370 mRNA_3002 0.69 +2.2
49,942 + 11370 mRNA_3002 0.85 -0.3
49,948 + 11370 mRNA_3002 0.86 -0.4
49,951 + 11370 mRNA_3002 0.87 +0.5
49,985 - +0.6
49,992 + +0.1
50,269 - +1.6
50,276 - +0.2

Or see this region's nucleotide sequence