Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3035

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11402 and 11403 are separated by 317 nucleotides11403 and 11404 are separated by 320 nucleotides mRNA_3034: 11402 - K05767 IQGAP2_3 Ras GTPase-activating-like protein IQGAP2/3, at 148,393 to 151,658 11402 mRNA_3035: 11403 - K03661 ATPeV0B, ATP6F V-type H+-transporting ATPase 21kDa proteolipid subunit, at 151,976 to 152,968 11403 mRNA_3036: 11404 - Hypothetical Protein, at 153,289 to 156,377 11404

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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151,009 + 11402 mRNA_3034 0.80 -0.6
151,253 - 11402 mRNA_3034 0.88 -0.7
151,604 - +2.2
151,652 - +0.2
151,769 + +0.0
151,874 + -0.4
152,871 + -0.3
153,073 + -0.1
153,102 + -1.4
153,236 + -0.6
153,237 + +1.0
153,253 + +0.7
153,268 - +0.3
153,418 - +1.1
153,656 - 11404 mRNA_3036 0.12 -0.3
153,656 + 11404 mRNA_3036 0.12 +0.5
153,663 + 11404 mRNA_3036 0.12 +0.7
153,670 - 11404 mRNA_3036 0.12 -0.3
153,688 - 11404 mRNA_3036 0.13 -1.2
153,847 + 11404 mRNA_3036 0.18 +1.1

Or see this region's nucleotide sequence