Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3128

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11495 and 11496 are separated by 89 nucleotides11496 and 11497 are separated by 227 nucleotides mRNA_3127: 11495 - K11984 SART1, HAF, SNU66 U4/U6.U5 tri-snRNP-associated protein 1, at 381,334 to 384,253 11495 mRNA_3128: 11496 - BLAST protein transporter [Pseudozyma hubeiensis SY62], at 384,343 to 385,202 11496 mRNA_3129: 11497 - KOG4090 Uncharacterized conserved protein, at 385,430 to 386,354 11497

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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383,425 + 11495 mRNA_3127 0.72 +0.6
383,455 + 11495 mRNA_3127 0.73 +0.2
383,585 - 11495 mRNA_3127 0.77 -0.2
383,599 - 11495 mRNA_3127 0.78 +0.2
383,613 + 11495 mRNA_3127 0.78 -0.8
383,762 - 11495 mRNA_3127 0.83 -0.0
384,060 + +1.9
384,122 - +0.6
384,271 + -0.1
384,348 + -0.0
384,349 - +1.6
384,352 + -0.5
384,442 + 11496 mRNA_3128 0.12 -0.0
384,476 - 11496 mRNA_3128 0.15 +0.1
384,485 - 11496 mRNA_3128 0.17 -0.4
384,508 - 11496 mRNA_3128 0.19 +0.1
384,531 + 11496 mRNA_3128 0.22 -0.2
384,599 + 11496 mRNA_3128 0.30 -1.9
384,619 + 11496 mRNA_3128 0.32 +0.1
384,650 + 11496 mRNA_3128 0.36 +1.0
384,741 + 11496 mRNA_3128 0.46 -0.1
384,741 + 11496 mRNA_3128 0.46 -0.2
384,741 + 11496 mRNA_3128 0.46 +0.1
384,741 + 11496 mRNA_3128 0.46 -0.7
384,744 + 11496 mRNA_3128 0.47 +1.4
384,922 - 11496 mRNA_3128 0.67 +1.1
384,929 + 11496 mRNA_3128 0.68 +1.1
384,948 + 11496 mRNA_3128 0.70 +0.6
384,948 + 11496 mRNA_3128 0.70 +0.4
385,095 + 11496 mRNA_3128 0.87 +1.2
385,095 + 11496 mRNA_3128 0.87 +1.7
385,237 + -0.2
385,246 - +1.4
385,249 + -0.6
385,256 + -0.7
385,258 - +1.1
385,365 - +0.7
385,376 + -0.5
385,386 - -0.2
385,532 - 11497 mRNA_3129 0.11 -1.5
385,689 - 11497 mRNA_3129 0.28 +0.2
385,696 - 11497 mRNA_3129 0.29 +0.2
385,825 - 11497 mRNA_3129 0.43 +0.2
385,838 + 11497 mRNA_3129 0.44 +0.1
385,958 + 11497 mRNA_3129 0.57 -0.1
385,987 - 11497 mRNA_3129 0.60 +1.6
386,110 - 11497 mRNA_3129 0.74 -1.6
386,116 - 11497 mRNA_3129 0.74 -0.3
386,127 - 11497 mRNA_3129 0.75 +0.1
386,136 - 11497 mRNA_3129 0.76 -0.5
386,139 - 11497 mRNA_3129 0.77 +0.6

Or see this region's nucleotide sequence