Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3130

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11498 and 11499 are separated by 306 nucleotides mRNA_3130: 11498 - KOG2109 WD40 repeat protein, at 387,441 to 391,334 11498 mRNA_3131: 11499 - KOG1230 Protein containing repeated kelch motifs, at 391,641 to 394,728 11499

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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386,534 + -0.6
386,545 - -0.9
386,549 - -0.3
386,566 - -0.2
386,713 - -0.6
386,731 + +0.4
386,845 - +2.2
386,855 - -1.4
387,131 + -0.1
387,132 - +0.5
387,132 - -0.0
387,145 + +0.2
387,148 + +1.7
387,152 - -1.3
387,154 + +0.0
387,154 + -0.2
387,159 + -0.9
387,161 + -0.1
387,168 + +0.4
387,173 + -0.3
387,292 - +0.6
387,300 + -0.4
387,307 + +0.2
387,308 - +0.2
387,312 - -0.0
387,313 + +1.0
387,332 + +0.0
387,333 + -0.1
387,464 - -0.2
387,465 - +0.7
387,472 + +0.1
387,489 + -0.6
387,515 + +0.0
387,607 + +0.4
387,608 - +0.7
387,617 - -0.4
387,633 + -3.1
387,894 - 11498 mRNA_3130 0.12 -0.3
387,899 + 11498 mRNA_3130 0.12 +0.9
387,899 + 11498 mRNA_3130 0.12 -0.3
388,068 + 11498 mRNA_3130 0.16 +0.1
388,225 - 11498 mRNA_3130 0.20 -0.7
388,343 - 11498 mRNA_3130 0.23 -0.2
388,364 - 11498 mRNA_3130 0.24 -1.1
388,371 + 11498 mRNA_3130 0.24 +0.6
388,444 - 11498 mRNA_3130 0.26 -0.1
388,463 + 11498 mRNA_3130 0.26 +0.5
388,471 - 11498 mRNA_3130 0.26 +0.5
388,752 + 11498 mRNA_3130 0.34 +1.6
388,914 + 11498 mRNA_3130 0.38 +0.7
389,076 - 11498 mRNA_3130 0.42 -1.2
389,124 - 11498 mRNA_3130 0.43 -0.2
389,222 - 11498 mRNA_3130 0.46 -0.1
389,392 + 11498 mRNA_3130 0.50 -0.7
389,397 - 11498 mRNA_3130 0.50 -0.4
389,510 + 11498 mRNA_3130 0.53 +0.4
389,779 - 11498 mRNA_3130 0.60 -0.6
389,834 + 11498 mRNA_3130 0.61 -0.8
389,985 + 11498 mRNA_3130 0.65 -0.4
390,138 + 11498 mRNA_3130 0.69 +0.2
390,270 - 11498 mRNA_3130 0.73 +1.0
390,376 + 11498 mRNA_3130 0.75 -0.2
390,417 + 11498 mRNA_3130 0.76 +1.5
390,538 + 11498 mRNA_3130 0.80 +0.2
390,549 - 11498 mRNA_3130 0.80 +0.8
390,703 - 11498 mRNA_3130 0.84 +0.5
390,706 + 11498 mRNA_3130 0.84 -0.3
390,719 + 11498 mRNA_3130 0.84 +0.7
390,721 + 11498 mRNA_3130 0.84 -0.2
390,854 - 11498 mRNA_3130 0.88 +0.7
390,896 - 11498 mRNA_3130 0.89 +0.7
391,116 - -1.2
391,132 + -1.5
391,152 - -0.3
391,305 + +0.4
391,309 + -1.8
391,424 - -0.2
391,585 + +0.5
391,588 + +0.5
391,622 - +0.6
392,104 - 11499 mRNA_3131 0.15 +1.0
392,295 - 11499 mRNA_3131 0.21 -0.6
392,303 + 11499 mRNA_3131 0.21 +1.1
392,319 - 11499 mRNA_3131 0.22 -0.3
392,331 - 11499 mRNA_3131 0.22 +0.5

Or see this region's nucleotide sequence