Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3159

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11526 and 11527 are separated by 67 nucleotides11527 and 11528 are separated by 795 nucleotides mRNA_3158: 11526 - KOG0453 Aconitase/homoaconitase (aconitase superfamily), at 451,339 to 452,325 11526 mRNA_3159: 11527 - K15437 AIMP1, ARC1 aminoacyl tRNA synthase complex-interacting multifunctional protein 1, at 452,393 to 454,134 11527 mRNA_3160: 11528 - Hypothetical Protein, at 454,930 to 455,731 11528

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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451,401 + +1.5
451,523 + 11526 mRNA_3158 0.19 -0.3
451,674 + 11526 mRNA_3158 0.34 +0.1
451,679 + 11526 mRNA_3158 0.34 +1.1
451,710 + 11526 mRNA_3158 0.38 -0.2
451,820 + 11526 mRNA_3158 0.49 -0.2
451,825 + 11526 mRNA_3158 0.49 +0.2
451,839 + 11526 mRNA_3158 0.51 -0.4
451,849 + 11526 mRNA_3158 0.52 -0.4
451,953 - 11526 mRNA_3158 0.62 -0.8
451,962 + 11526 mRNA_3158 0.63 -0.6
451,963 - 11526 mRNA_3158 0.63 -0.2
451,972 - 11526 mRNA_3158 0.64 -0.2
451,973 + 11526 mRNA_3158 0.64 -0.7
451,977 - 11526 mRNA_3158 0.65 -0.7
452,121 + 11526 mRNA_3158 0.79 +0.3
452,139 + 11526 mRNA_3158 0.81 +0.1
452,158 + 11526 mRNA_3158 0.83 +0.3
452,257 + +0.2
452,259 + +1.7
452,262 + +0.8
452,271 - -0.5
452,274 - +0.0
452,274 - -0.1
452,279 - -0.2
452,279 + +0.1
452,284 + +0.0
452,284 + -0.8
452,284 + -0.0
452,285 - -0.1
452,401 - +0.2
452,425 - -0.2
452,426 - +1.5
452,427 + +1.1
452,430 + +2.1
452,464 - -0.1
452,562 - +0.7
452,564 + -1.0
452,576 + 11527 mRNA_3159 0.11 +0.6
452,870 + 11527 mRNA_3159 0.27 +0.3
452,872 + 11527 mRNA_3159 0.27 +0.8
453,000 - 11527 mRNA_3159 0.35 -1.5
453,010 - 11527 mRNA_3159 0.35 +0.3
453,059 - 11527 mRNA_3159 0.38 -0.7
453,140 - 11527 mRNA_3159 0.43 -0.1
453,281 + 11527 mRNA_3159 0.51 -0.6
453,437 + 11527 mRNA_3159 0.60 -0.1
453,441 + 11527 mRNA_3159 0.60 -0.1
453,606 + 11527 mRNA_3159 0.70 +0.1
453,739 - 11527 mRNA_3159 0.77 +0.4
453,748 - 11527 mRNA_3159 0.78 +0.5
453,759 + 11527 mRNA_3159 0.78 +0.0
453,761 + 11527 mRNA_3159 0.79 +0.4
453,772 - 11527 mRNA_3159 0.79 +0.9
453,776 - 11527 mRNA_3159 0.79 +1.6
453,851 - 11527 mRNA_3159 0.84 +1.3
453,851 + 11527 mRNA_3159 0.84 +0.1
453,861 - 11527 mRNA_3159 0.84 -0.1
453,872 + 11527 mRNA_3159 0.85 +0.1
453,881 + 11527 mRNA_3159 0.85 +0.4
453,898 + 11527 mRNA_3159 0.86 -0.8
453,900 - 11527 mRNA_3159 0.87 +0.3
453,910 - 11527 mRNA_3159 0.87 +1.9
453,964 - -0.6
453,965 - +0.3
453,971 - +0.8
454,003 - -0.3
454,018 - +0.7
454,022 + +0.0
454,023 - -0.0
454,049 + -0.1
454,057 - +0.1
454,060 - -0.3
454,060 - -0.3
454,063 + -1.0
454,065 - +0.4
454,068 + +0.6
454,078 + +0.7
454,089 + -0.4
454,102 + -0.8
454,129 - +0.4
454,139 - -1.1
454,148 - +1.9
454,180 - +1.6
454,184 - -0.2
454,216 - +0.3
454,218 - +1.5
454,220 - -1.5
454,234 + -0.3
454,240 + +0.8
454,240 - -0.5
454,245 + +0.2
454,246 + -0.2
454,253 - -1.0
454,259 - -0.6
454,274 + -0.4
454,275 + +0.5
454,278 + -1.8
454,283 + +0.3
454,304 - -0.4
454,348 - +0.1
454,362 - -0.2
454,380 + -0.1
454,393 - -0.2
454,470 - -0.0
454,477 - -0.7
454,503 - -0.8
454,507 - -0.4
454,552 - +0.5
454,552 + -0.7
454,566 + -0.1
454,570 + +0.2
454,601 + -0.4
454,606 + -1.5
454,611 - -1.1
454,627 + +0.5
454,639 + -1.2
454,641 + -0.4
454,642 + -0.3
454,642 - -0.0
454,642 - -0.1
454,643 - -0.4
454,655 - +0.8
454,659 + -0.9
454,661 - -0.2
454,662 - +0.0
454,677 + +0.9
454,677 + -0.6
454,678 - -1.3
454,679 + -0.3
454,680 - -0.0
454,681 + +0.4
454,694 - +0.6
454,694 - +1.1
454,696 - -0.7
454,707 - +0.8
454,709 - +1.1
454,713 - -0.8
454,717 - +0.0

Or see this region's nucleotide sequence