Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
12 + +0.8
12 + -0.6
15 + +0.2
16 + -0.3
18 + +0.1
22 + +0.4
25 + -0.6
57 - -0.9
61 - +0.8
62 + -0.6
62 + -0.1
66 + +0.8
72 + -0.4
72 + -0.9
72 + +0.0
75 + -1.7
78 - +0.3
105 + +0.4
110 - -0.7
114 + -0.1
115 + -0.4
118 + -0.5
122 + -0.6
122 - -0.3
124 + +0.6
135 + +0.7
147 + -1.1
157 + -0.7
161 + +0.1
168 + -0.3
174 + -0.1
177 - +0.2
228 + +1.1
247 + +0.1
252 - +0.1
253 - +1.1
255 + +0.5
258 + -0.7
264 - +0.6
269 + -0.3
269 - -0.6
274 + -0.4
275 - -1.1
277 + -0.4
280 + +0.1
280 + +0.9
283 - +0.2
285 - -0.4
287 + +0.5
287 + +0.7
288 + -1.4
292 - -0.4
293 + -0.4
298 + +0.4
305 - -0.1
314 + +0.3
320 + -0.7
368 + +0.4
370 - -0.0
372 + -1.4
382 + -0.0
384 + +0.2
391 + +1.7
391 - +0.6
397 + -1.4
397 - +0.6
402 + +0.3
405 + -0.0
423 - +0.1
430 + -0.4
440 + -0.6
446 + +0.5
470 + -0.3
524 + +0.5
532 + -1.3
545 - -0.0
557 + -0.5
569 + +0.5
570 - +0.2
583 + +0.4
584 + +0.3
603 - +0.3
603 + -0.5
634 - 11537 mRNA_3169 0.11 +0.1
636 + 11537 mRNA_3169 0.11 +1.0
646 + 11537 mRNA_3169 0.12 +0.0
661 + 11537 mRNA_3169 0.13 +0.5
667 + 11537 mRNA_3169 0.14 +0.4
698 + 11537 mRNA_3169 0.17 -0.2
704 - 11537 mRNA_3169 0.18 -0.5
705 - 11537 mRNA_3169 0.18 -0.7
721 - 11537 mRNA_3169 0.19 +0.5
725 + 11537 mRNA_3169 0.20 +0.9
738 - 11537 mRNA_3169 0.21 -0.1
849 + 11537 mRNA_3169 0.32 -0.5
871 + 11537 mRNA_3169 0.34 -1.4
883 + 11537 mRNA_3169 0.35 +1.9
894 + 11537 mRNA_3169 0.37 -0.3
895 + 11537 mRNA_3169 0.37 +0.2
922 + 11537 mRNA_3169 0.39 +0.7
965 - 11537 mRNA_3169 0.44 +0.1
1,012 - 11537 mRNA_3169 0.48 -1.4
1,026 + 11537 mRNA_3169 0.50 +0.7
1,026 + 11537 mRNA_3169 0.50 +0.9
1,105 + 11537 mRNA_3169 0.58 +0.8
1,123 + 11537 mRNA_3169 0.60 -0.4
1,141 + 11537 mRNA_3169 0.61 +0.4
1,142 + 11537 mRNA_3169 0.61 +0.3
1,165 + 11537 mRNA_3169 0.64 -0.2
1,174 - 11537 mRNA_3169 0.65 +1.1
1,174 + 11537 mRNA_3169 0.65 +0.5
1,259 + 11537 mRNA_3169 0.73 -0.7
1,265 + 11537 mRNA_3169 0.74 +0.7
1,268 + 11537 mRNA_3169 0.74 +0.5
1,269 - 11537 mRNA_3169 0.74 -0.3
1,288 - 11537 mRNA_3169 0.76 +0.9
1,297 + 11537 mRNA_3169 0.77 -0.6
1,303 - 11537 mRNA_3169 0.78 -0.5
1,399 + 11537 mRNA_3169 0.87 +1.2
1,412 - 11537 mRNA_3169 0.88 +1.4
1,419 - 11537 mRNA_3169 0.89 +0.0
1,423 - 11537 mRNA_3169 0.90 -0.8
1,429 - -0.2
1,453 + +0.3
1,459 + -0.1
1,459 + +0.1
1,460 - +0.4
1,461 + -0.3
1,462 + -0.3
1,467 + +0.5
1,470 - +0.8
1,474 - -0.0
1,485 + -0.6
1,520 + +0.4
1,523 + -0.5
1,531 - +0.1
1,537 + +0.1
1,541 + +0.7
1,562 + +0.3
1,567 + +0.2
1,572 + +0.8
1,582 - -0.6
1,584 - -1.1
1,589 + +0.8
1,596 - +0.1
1,601 - +0.3
1,602 + -0.4
1,605 + -0.1
1,609 + +0.0
1,616 + +0.3
1,636 + +0.2
1,654 + -0.8
1,656 - -0.2
1,666 + +1.9
1,675 - +1.0
1,682 - -0.7
1,697 - +0.4
1,709 + +0.1
1,709 - -0.3
1,711 + +0.2
1,718 - +0.0
1,719 + -0.4
1,722 - +1.1
1,723 + +0.3
1,725 - +0.0
1,725 - +1.6
1,727 + -0.6
1,730 + +0.9
1,731 + +0.5
1,732 + -1.1
1,732 + -0.0
1,734 + +1.2
1,734 + -0.3
1,734 + -0.1
1,739 - +0.6
1,740 + +0.6
1,744 - +0.2
1,747 + -0.1
1,749 + -0.0
1,759 + -0.3
1,759 + +0.9
1,759 + +0.2
1,761 + +0.3
1,763 + -1.1
1,765 + +0.6
1,767 + -1.4
1,769 + +0.5
1,772 + +0.8
1,772 + -0.0
1,774 + -0.2
1,774 + -0.1
1,775 + -0.4
1,776 - -0.8
1,776 + +0.5
1,777 + +0.0
1,778 + +0.4
1,778 - -0.4
1,781 - -0.4
1,783 - -0.3
1,783 - -0.7
1,783 - +0.7
1,783 - +0.5
1,784 + -2.9
1,789 + -0.9
1,789 - +0.2
1,791 + -0.4
1,792 + +0.2
1,793 + -0.7
1,795 + +0.3
1,796 + +0.9
1,796 - +0.6
1,798 + -1.3
1,800 + -0.6
1,801 + +0.2
1,805 + -0.1
1,805 + +1.2
1,807 + +0.3
1,813 - -0.9
1,814 + -0.4
1,814 + +1.2
1,818 - +0.2
1,851 - +0.3
1,874 + +0.9
1,881 - -1.0
1,885 - -0.8
1,891 - +0.4
1,896 - +0.1
1,912 + -0.1
1,912 + +0.3
1,914 - +0.2
1,916 - -1.4
1,917 - -0.7
1,919 + +0.7
1,922 - +0.4
1,923 - +1.2
1,934 - +0.5
1,935 + -0.4
1,938 - +0.3
1,938 - -1.1
1,940 - -0.3
1,941 + -0.6
1,941 + +0.6
1,942 + -0.1
1,943 - -0.3
1,944 + -0.1
1,944 - -1.0
1,945 - -0.3
1,945 + +0.3
1,946 - +0.4
1,947 + -0.2
1,960 - +0.5
1,968 + -1.0
1,980 + +1.0
2,015 + +0.9
2,067 - -0.8
2,081 - +0.2
2,091 + +0.7
2,220 + -0.2
2,229 - -1.8
2,235 - +0.4
2,237 - -0.6
2,242 + -0.4
2,242 - -0.4
2,245 - +0.6
2,248 - -1.6
2,251 + -0.5
2,254 - -0.4
2,261 + -0.3
2,262 - +1.8
2,266 + +0.0
2,268 + +0.9
2,400 + 11538 mRNA_3170 0.21 +0.1
2,401 - 11538 mRNA_3170 0.21 +0.6
2,404 + 11538 mRNA_3170 0.22 -0.2
2,414 + 11538 mRNA_3170 0.23 +0.6
2,420 - 11538 mRNA_3170 0.23 -1.1
2,439 + 11538 mRNA_3170 0.25 +0.3
2,446 + 11538 mRNA_3170 0.26 -1.4
2,470 - 11538 mRNA_3170 0.28 +1.4
2,516 - 11538 mRNA_3170 0.32 +1.3

Or see this region's nucleotide sequence