Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3289

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11656 and 11657 are separated by 296 nucleotides mRNA_3288: 11656 - K03240 EIF2B5 translation initiation factor eIF-2B subunit epsilon, at 298,551 to 301,179 11656 mRNA_3289: 11657 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 301,476 to 302,545 11657

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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301,192 + +1.4
301,233 + +0.4
301,276 - -0.4
301,325 + +0.2
301,332 - +0.1
301,395 - +0.4
301,405 - +0.7
301,415 - -0.5
301,415 - -1.3
301,419 - +0.8
301,419 - -0.3
301,431 - +0.6

Or see this region's nucleotide sequence