Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3302

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_3302: 11670 - K07232 chaC cation transport protein ChaC, at 343,221 to 344,290 11670

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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342,231 + +0.9
342,232 + +0.5
342,268 + +0.4
342,271 + -0.2
342,291 - -0.1
342,310 + -0.6
342,310 + -0.2
342,312 + +0.3
342,328 + +0.4
342,336 - -0.9
342,340 - -0.2
342,384 + +0.3
342,414 + +1.3
342,421 - +0.1
342,423 - -0.6
342,440 - -1.3
342,446 - -0.0
342,463 - +0.4
342,563 + -0.1
342,588 - -0.1
342,704 - +0.3
342,713 + +0.8
342,768 + -1.4
343,017 + +1.0
343,606 - 11670 mRNA_3302 0.36 +0.7
343,633 - 11670 mRNA_3302 0.39 -0.9
344,499 + +1.1

Or see this region's nucleotide sequence