Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3366

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11733 and 11734 overlap by 6 nucleotides11734 and 11735 are separated by 428 nucleotides mRNA_3365: 11733 - Hypothetical Protein, at 503,497 to 504,156 11733 mRNA_3366: 11734 - Hypothetical Protein, at 504,151 to 506,017 11734 mRNA_3367: 11735 - Hypothetical Protein, at 506,446 to 507,688 11735

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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503,345 - -0.1
503,353 + -0.8
503,356 - +2.1
503,363 + +0.5
503,363 + -0.5
503,368 + +0.1
503,368 - +1.0
503,377 - +2.6
503,378 - +0.0
503,418 - +0.1
503,717 + 11733 mRNA_3365 0.33 -0.8
503,865 + 11733 mRNA_3365 0.56 +0.8
503,954 - 11733 mRNA_3365 0.69 +0.8
504,072 + 11733 mRNA_3365 0.87 +1.3
504,210 + +0.6
504,395 + 11734 mRNA_3366 0.13 -0.3
504,488 - 11734 mRNA_3366 0.18 -0.2
504,492 + 11734 mRNA_3366 0.18 +0.1
504,573 + 11734 mRNA_3366 0.23 +0.2
504,660 - 11734 mRNA_3366 0.27 +0.2
504,942 - 11734 mRNA_3366 0.42 +0.4
505,332 - 11734 mRNA_3366 0.63 +0.7
505,688 + 11734 mRNA_3366 0.82 +0.1

Or see this region's nucleotide sequence