Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3371

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11738 and 11739 are separated by 911 nucleotides11739 and 11740 are separated by 881 nucleotides mRNA_3370: 11738 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 513,932 to 515,418 11738 mRNA_3371: 11739 - K13806 DAGL sn1-specific diacylglycerol lipase, at 516,330 to 521,387 11739 mRNA_3372: 11740 - K15103 UCP2_3, SLC25A8_9 solute carrier family 25 (mitochondrial uncoupling protein), member 8/9, at 522,269 to 523,428 11740

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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515,473 + -0.3
515,483 + +0.2
515,485 + -0.6
515,505 + -0.9
515,526 + +1.0
515,583 - +0.1
515,593 + +2.4
515,611 - +0.5
515,638 - -0.6
515,639 - +1.0
515,639 - +1.0
515,642 + -0.3
515,642 - -0.8
515,645 + +0.6
515,647 + -0.1
515,648 + +0.1
515,648 + +0.7
515,648 + -0.1
515,652 - +0.5
515,656 - -0.1
515,658 + -0.4
515,660 + +1.0
515,667 + -0.3
515,669 + +0.4
515,674 - +0.2
515,677 - +0.6
515,677 + -0.1
515,683 + -0.8
515,690 + -0.7
515,710 + +0.2
515,729 - -0.2
515,772 - +0.5
515,875 + +0.1
515,881 - +0.6
515,881 - +0.3
515,881 + +0.3
515,881 - +0.2
515,881 - -0.3
515,882 + +0.4
515,882 - -0.4
515,896 - -0.3
515,901 + -1.0
515,902 + -0.2
515,902 + -0.9
515,905 + +0.8
515,908 - -0.0
515,914 - +1.3
515,914 + -0.8
515,914 - -1.1
515,919 + +2.1
515,920 - +0.9
515,926 + +0.1
515,935 - +1.1
515,940 + -0.2
515,941 - +0.3
515,947 - +1.2
516,164 - +0.5
516,356 - +0.3
516,369 - +0.1
516,661 - +0.7
516,901 - 11739 mRNA_3371 0.11 -0.1
517,256 + 11739 mRNA_3371 0.18 +0.4
517,382 + 11739 mRNA_3371 0.21 +1.4
517,388 + 11739 mRNA_3371 0.21 -0.5
517,606 - 11739 mRNA_3371 0.25 +0.6
517,821 + 11739 mRNA_3371 0.29 +0.3
517,833 + 11739 mRNA_3371 0.30 +0.8
517,950 - 11739 mRNA_3371 0.32 -1.5
517,962 + 11739 mRNA_3371 0.32 +1.8
517,962 + 11739 mRNA_3371 0.32 +0.2
517,966 + 11739 mRNA_3371 0.32 -3.0
518,245 - 11739 mRNA_3371 0.38 +0.4
518,271 + 11739 mRNA_3371 0.38 +0.1
518,320 - 11739 mRNA_3371 0.39 +0.0
518,965 + 11739 mRNA_3371 0.52 -0.1
519,007 + 11739 mRNA_3371 0.53 +0.1
519,188 + 11739 mRNA_3371 0.57 -1.1
519,286 - 11739 mRNA_3371 0.58 +0.3
519,372 + 11739 mRNA_3371 0.60 +0.8
519,375 - 11739 mRNA_3371 0.60 +0.3
519,699 - 11739 mRNA_3371 0.67 +0.4
519,811 - 11739 mRNA_3371 0.69 +1.1
519,817 - 11739 mRNA_3371 0.69 -0.6
519,969 - 11739 mRNA_3371 0.72 +0.9
520,022 - 11739 mRNA_3371 0.73 -0.1
520,043 + 11739 mRNA_3371 0.73 +0.1
520,222 - 11739 mRNA_3371 0.77 +1.3
520,461 - 11739 mRNA_3371 0.82 -0.0
520,473 - 11739 mRNA_3371 0.82 +0.5
520,563 + 11739 mRNA_3371 0.84 +0.1
520,585 + 11739 mRNA_3371 0.84 -1.0
520,615 - 11739 mRNA_3371 0.85 -0.2
520,712 + 11739 mRNA_3371 0.87 -0.1
520,806 + 11739 mRNA_3371 0.88 -0.0
520,823 - 11739 mRNA_3371 0.89 -0.1
520,849 + 11739 mRNA_3371 0.89 +0.1
520,872 - 11739 mRNA_3371 0.90 -0.2
520,945 - -0.5
520,957 + -1.0
520,959 + -0.4
520,977 + +0.1
520,978 + +1.0
521,002 + +0.4
521,081 - -0.2
521,085 + -0.6
521,108 + -0.2
521,147 + -0.1
521,154 + +1.1
521,156 + -0.8
521,209 + -0.5
521,227 + -0.1
521,259 - +0.1
521,291 - +0.5
521,298 + +0.2
521,422 - +1.0
521,540 - -0.0
521,560 + -0.5
521,562 + -0.2
521,569 - -0.9
521,574 + -1.5
521,579 - +0.9
521,583 + -0.0
521,588 - +0.7
521,603 + -1.4
521,607 - +0.2
521,610 + +0.4
521,610 + +0.4
521,631 - -0.2
521,631 + -0.6
521,633 - -0.2
521,736 + -0.5
521,742 + +0.4
521,758 - -0.0
521,905 - -0.7
522,188 + +0.5
522,235 - +0.1

Or see this region's nucleotide sequence