Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3380

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11747 and 11748 are separated by 329 nucleotides11748 and 11749 are separated by 620 nucleotides mRNA_3379: 11747 - Hypothetical Protein, at 537,005 to 537,944 11747 mRNA_3380: 11748 - KOG1650 Predicted K+/H+-antiporter, at 538,274 to 541,877 11748 mRNA_3381: 11749 - K06027 NSF vesicle-fusing ATPase, at 542,498 to 545,831 11749

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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537,282 + 11747 mRNA_3379 0.29 -0.3
537,427 + 11747 mRNA_3379 0.45 -0.6
537,427 + 11747 mRNA_3379 0.45 +0.8
537,427 + 11747 mRNA_3379 0.45 -0.8
537,433 + 11747 mRNA_3379 0.46 +0.2
537,522 - 11747 mRNA_3379 0.55 +0.0
537,557 - 11747 mRNA_3379 0.59 -0.6
537,614 + 11747 mRNA_3379 0.65 +0.2
537,844 - 11747 mRNA_3379 0.89 -0.9
537,850 + 11747 mRNA_3379 0.90 -0.5
537,960 + +0.6
538,116 - -0.9
538,127 + -0.5
538,240 + +2.1
538,441 - -0.6
538,573 - -0.6
538,704 + 11748 mRNA_3380 0.12 -1.3
538,706 + 11748 mRNA_3380 0.12 +0.1
538,715 + 11748 mRNA_3380 0.12 -0.9
538,726 - 11748 mRNA_3380 0.13 -0.2
538,835 + 11748 mRNA_3380 0.16 +0.5
539,084 - 11748 mRNA_3380 0.22 -0.6
539,133 - 11748 mRNA_3380 0.24 -0.3
539,154 - 11748 mRNA_3380 0.24 -0.7
539,215 + 11748 mRNA_3380 0.26 -0.7
539,250 + 11748 mRNA_3380 0.27 -1.6
539,296 - 11748 mRNA_3380 0.28 +0.3
539,302 + 11748 mRNA_3380 0.29 -0.1
539,354 + 11748 mRNA_3380 0.30 +0.6
539,561 + 11748 mRNA_3380 0.36 -0.3
539,700 + 11748 mRNA_3380 0.40 -1.0
539,700 + 11748 mRNA_3380 0.40 -1.2
539,701 + 11748 mRNA_3380 0.40 +0.5
539,702 - 11748 mRNA_3380 0.40 -0.1
539,721 + 11748 mRNA_3380 0.40 -0.9
539,737 - 11748 mRNA_3380 0.41 +0.6
539,737 - 11748 mRNA_3380 0.41 -0.8
539,777 + 11748 mRNA_3380 0.42 +0.3
539,864 + 11748 mRNA_3380 0.44 -0.8
539,918 - 11748 mRNA_3380 0.46 +0.4
540,199 - 11748 mRNA_3380 0.53 -0.5
540,341 + 11748 mRNA_3380 0.57 -0.3
540,387 + 11748 mRNA_3380 0.59 -0.1
540,611 + 11748 mRNA_3380 0.65 +0.3
540,689 + 11748 mRNA_3380 0.67 +0.7
541,136 + 11748 mRNA_3380 0.79 +1.9
541,477 + 11748 mRNA_3380 0.89 +0.6
541,570 - +0.3
541,594 - +1.0
541,632 + +0.4
541,744 - +0.3
541,902 + +0.4
542,042 - -0.7
542,052 + -0.1
542,063 + -0.1
542,068 + +0.8
542,072 + -1.1
542,079 + -0.3
542,082 - +0.9
542,089 + +0.5
542,221 - +0.5
542,224 + +1.2
542,372 + -0.1
542,466 - +2.5
542,505 - +0.4

Or see this region's nucleotide sequence